RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 VPS41P49754 854 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 WDR4P57081 412 aaKnown RBP20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 ANKRD20A2Q5SQ80 823 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 ANKRD20A1Q5TYW2 823 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 ANKRD20A3Q5VUR7 823 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 EP400NLQ6ZTU2 488 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 ETNK1Q9HBU6 452 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 ANKRD31Q8N7Z5 1873 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 ATRNL1Q5VV63 1379 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 GH2P01242 217 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 CDC25CP30307 473 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 VPS72Q15906 364 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 ATL2Q8NHH9 583 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 FBF1Q8TES7 1133 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 PITPNM3Q9BZ71 974 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 MYLK2Q9H1R3 596 aa20.86■□□□□ 0.93
PDLIM3-212ENST00000620787 GOLGA8IPA6NC78 632 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 GOLGA8JA6NMD2 632 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 IPO5O00410 1097 aaKnown RBP20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 RRM1P23921 792 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 MCCD1P59942 119 aaPredicted RBP20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 CLEC16AQ2KHT3 1053 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 FAM47EQ6ZV65 393 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 RAB3IPQ96QF0 476 aaPredicted RBP20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 LRRC4BQ9NT99 713 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 TXLNGQ9NUQ3 528 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 DDX39AO00148 427 aaKnown RBP20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 SMNDC1O75940 238 aaKnown RBP eCLIP20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 PLS3P13797 630 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 STAT2P52630 851 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 STAT4Q14765 748 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 PRUNE1Q86TP1 453 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 RELL1Q8IUW5 271 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 MAML1Q92585 1016 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 DDX27Q96GQ7 796 aaKnown RBP20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 C9orf72Q96LT7 481 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 SLC24A3Q9HC58 644 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 ARHGEF10LQ9HCE6 1279 aa20.85■□□□□ 0.93
PDLIM3-212ENST00000620787 MROH7Q68CQ1 1323 aa20.84■□□□□ 0.93
PDLIM3-212ENST00000620787 IL9RQ01113 521 aa20.84■□□□□ 0.93
PDLIM3-212ENST00000620787 CCDC174Q6PII3 467 aa20.84■□□□□ 0.93
PDLIM3-212ENST00000620787 DHX38Q92620 1227 aaKnown RBP20.84■□□□□ 0.93
PDLIM3-212ENST00000620787 FAM47DPA6NHR8 397 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 RASA4BC9J798 803 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 RASA4O43374 803 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 POLGP54098 1239 aaPredicted RBP20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 GTF2BQ00403 316 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 CENPCQ03188 943 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 TMED2Q15363 201 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 PARP6Q2NL67 630 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 HAUS6Q7Z4H7 955 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 CBWD2Q8IUF1 395 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 LRMDAQ9H2I8 198 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 COQ4Q9Y3A0 265 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 MAGEB2O15479 319 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 ASMTLO95671 621 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 CALCAP01258 141 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 GPC3P51654 580 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 KLF1Q13351 362 aaPredicted RBP20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 ANKRD35Q8N283 1001 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 ELMO3Q96BJ8 720 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 SPDL1Q96EA4 605 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 CCDC77Q9BR77 488 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 EHMT1Q9H9B1 1298 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 STARD13Q9Y3M8 1113 aa20.83■□□□□ 0.93
PDLIM3-212ENST00000620787 IZUMO3Q5VZ72 239 aa20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 KRT39Q6A163 491 aa20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 KCNV2Q8TDN2 545 aa20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 KIFAP3Q92845 792 aa20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 RIT2Q99578 217 aa20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 NKX1-2Q9UD57 310 aaPredicted RBP20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 CHKBQ9Y259 395 aa20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 ZNF536O15090 1300 aa20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 POLRMTO00411 1230 aaKnown RBP20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 LIN7AO14910 233 aaPredicted RBP20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 RARRES1P49788 294 aa20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 YARSP54577 528 aaKnown RBP20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 TRAF1Q13077 416 aa20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 SNRNP35Q16560 246 aaKnown RBP20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 RBM26Q5T8P6 1007 aaKnown RBP20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 MIER3Q7Z3K6 550 aa20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 RIBC1Q8N443 379 aaPredicted RBP20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 ERP27Q96DN0 273 aa20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 NT5C1BQ96P26 610 aa20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 HEMGNQ9BXL5 484 aa20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 ZNF646O15015 1829 aaPredicted RBP20.82■□□□□ 0.92
PDLIM3-212ENST00000620787 TOM1O60784 492 aa20.81■□□□□ 0.92
PDLIM3-212ENST00000620787 ABHD2P08910 425 aa20.81■□□□□ 0.92
PDLIM3-212ENST00000620787 RALAP11233 206 aa20.81■□□□□ 0.92
PDLIM3-212ENST00000620787 GNAZP19086 355 aa20.81■□□□□ 0.92
PDLIM3-212ENST00000620787 GCAP28676 217 aa20.81■□□□□ 0.92
PDLIM3-212ENST00000620787 ABL2P42684 1182 aa20.81■□□□□ 0.92
PDLIM3-212ENST00000620787 ECE1P42892 770 aa20.81■□□□□ 0.92
PDLIM3-212ENST00000620787 RBM5P52756 815 aaKnown RBP eCLIP20.81■□□□□ 0.92
PDLIM3-212ENST00000620787 SNRPFP62306 86 aaKnown RBP20.81■□□□□ 0.92
PDLIM3-212ENST00000620787 MOGSQ13724 837 aa20.81■□□□□ 0.92
PDLIM3-212ENST00000620787 BLMHQ13867 455 aa20.81■□□□□ 0.92
PDLIM3-212ENST00000620787 CDCA2Q69YH5 1023 aaPredicted RBP20.81■□□□□ 0.92
PDLIM3-212ENST00000620787 TRABD2AQ86V40 505 aa20.81■□□□□ 0.92
PDLIM3-212ENST00000620787 MCOLN2Q8IZK6 566 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms