RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ARHGAP1Q07960 439 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 MYBPC2Q14324 1141 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 NAB2Q15742 525 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 AMHR2Q16671 573 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 CCDC114Q96M63 670 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 ARHGAP28Q9P2N2 729 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 ZMYM2Q9UBW7 1377 aa16.83■□□□□ 0.29
CPSF1-213ENST00000620219 ZNF200P98182 395 aaPredicted RBP16.83■□□□□ 0.29
CPSF1-213ENST00000620219 TMEM132DQ14C87 1099 aa16.83■□□□□ 0.29
CPSF1-213ENST00000620219 PPTC7Q8NI37 304 aa16.83■□□□□ 0.29
CPSF1-213ENST00000620219 SALL4Q9UJQ4 1053 aa16.83■□□□□ 0.29
CPSF1-213ENST00000620219 DIS3Q9Y2L1 958 aaKnown RBP16.83■□□□□ 0.29
CPSF1-213ENST00000620219 KIAA0391O15091 583 aaKnown RBP16.83■□□□□ 0.28
CPSF1-213ENST00000620219 SNAI1O95863 264 aaPredicted RBP16.83■□□□□ 0.28
CPSF1-213ENST00000620219 AKAP5P24588 427 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 GPC5P78333 572 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 C10orf76Q5T2E6 689 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 SLC35G2Q8TBE7 412 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 KATNAL1Q9BW62 490 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 THAP2Q9H0W7 228 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 MMP3P08254 477 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 POLR2BP30876 1174 aaKnown RBP16.83■□□□□ 0.28
CPSF1-213ENST00000620219 KAZNQ674X7 775 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 SCYL2Q6P3W7 929 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 GSTA5Q7RTV2 222 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 SLC9A9Q8IVB4 645 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 TMC2Q8TDI7 906 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 SOCS4Q8WXH5 440 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 NIFKQ9BYG3 293 aaKnown RBP16.83■□□□□ 0.28
CPSF1-213ENST00000620219 HESX1Q9UBX0 185 aa16.83■□□□□ 0.28
CPSF1-213ENST00000620219 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.83■□□□□ 0.28
CPSF1-213ENST00000620219 GTPBP10A4D1E9 387 aaKnown RBP16.82■□□□□ 0.28
CPSF1-213ENST00000620219 RAP1GAPP47736 663 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 PSEN2P49810 448 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 HGSNATQ68CP4 663 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 SEMA4DQ92854 862 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 NUP85Q9BW27 656 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 RGPD3A6NKT7 1758 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-213ENST00000620219 RGPD4Q7Z3J3 1758 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 SYNJ2BP-COX16A0A087WUM0 186 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 P4HA2O15460 535 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 SMIM10L2AP0DMW4 78 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 SMIM10L2BP0DMW5 78 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 THPOP40225 353 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 VPS41P49754 854 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 ZNF792Q3KQV3 632 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 SYN2Q92777 582 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-213ENST00000620219 MED10Q9BTT4 135 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 OSGEPQ9NPF4 335 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 COX16Q9P0S2 106 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 FER1L6Q2WGJ9 1857 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 RPS6KA5O75582 802 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 ARL2P36404 184 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 MARSP56192 900 aaKnown RBP16.82■□□□□ 0.28
CPSF1-213ENST00000620219 FIZ1Q96SL8 496 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 AIPL1Q9NZN9 384 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 ATF7P17544 494 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-213ENST00000620219 RFX1P22670 979 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 MCM3P25205 808 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 MTHFD1LQ6UB35 978 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 CAPNS2Q96L46 248 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 XPNPEP3Q9NQH7 507 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 SNTG2Q9NY99 539 aa16.82■□□□□ 0.28
CPSF1-213ENST00000620219 ESYT3A0FGR9 886 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 EDNRBP24530 442 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 TBXAS1P24557 533 aaPredicted RBP16.81■□□□□ 0.28
CPSF1-213ENST00000620219 VSNL1P62760 191 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 SP3Q02447 781 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 NOGQ13253 232 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 IPO4Q8TEX9 1081 aaKnown RBP16.81■□□□□ 0.28
CPSF1-213ENST00000620219 BTBD6Q96KE9 485 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 ZIC5Q96T25 663 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 APBA2Q99767 749 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 ABCB6Q9NP58 842 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 SNX12Q9UMY4 172 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 ERICH4A6NGS2 130 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 CLTAP09496 248 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 CUL2Q13617 745 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 CCDC25Q86WR0 208 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 CGRRF1Q99675 332 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 DDX3XO00571 662 aaKnown RBP eCLIP16.81■□□□□ 0.283e-17■■■■□ 26.6
CPSF1-213ENST00000620219 BRD2P25440 801 aaKnown RBP16.81■□□□□ 0.28
CPSF1-213ENST00000620219 CDH8P55286 799 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 HTRA3P83110 453 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 SGSM1Q2NKQ1 1148 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 ZPBP2Q6X784 338 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 ERICH1Q86X53 443 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 MTUS1Q9ULD2 1270 aa16.81■□□□□ 0.28
CPSF1-213ENST00000620219 PDGFRBP09619 1106 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 PPP1R7Q15435 360 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 DNAJC24Q6P3W2 148 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 ZNF564Q8TBZ8 553 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-213ENST00000620219 PNKPQ96T60 521 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 ACO2Q99798 780 aaKnown RBP16.8■□□□□ 0.28
CPSF1-213ENST00000620219 DPH5Q9H2P9 285 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 SNX25Q9H3E2 840 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 DMAC2Q9NW81 257 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 BCCIPQ9P287 314 aaKnown RBP eCLIP16.8■□□□□ 0.28
CPSF1-213ENST00000620219 CYP11B1P15538 503 aa16.8■□□□□ 0.28
CPSF1-213ENST00000620219 GHRHRQ02643 423 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms