RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 FAM167BQ9BTA0 163 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 ARFGEF1Q9Y6D6 1849 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 INO80B-WBP1J3KQ70 363 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 USP2O75604 605 aaPredicted RBP15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 LCA5LO95447 670 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 JAK3P52333 1124 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 TNNC1P63316 161 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 RNF217Q8TC41 542 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 SYN2Q92777 582 aaPredicted RBP15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 INO80BQ9C086 356 aaPredicted RBP15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 SNX24Q9Y343 169 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 ALG6Q9Y672 507 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 DHX9Q08211 1270 aaKnown RBP15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 UAP1Q16222 522 aaPredicted RBP15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 DPY19L2P1Q6NXN4 242 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 CATSPERGQ6ZRH7 1159 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 FBXO16Q8IX29 292 aaPredicted RBP15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 C4orf19Q8IY42 314 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 USP38Q8NB14 1042 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 TAF1DQ9H5J8 278 aaPredicted RBP15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 XPNPEP1Q9NQW7 623 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 PFASO15067 1338 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 PRLRP16471 622 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 ITIH3Q06033 890 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 BYSLQ13895 437 aaKnown RBP15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 IFI16Q16666 785 aaKnown RBP15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 TMEM270Q6UE05 265 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 ACSF2Q96CM8 615 aaPredicted RBP15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 NT5C1BQ96P26 610 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 ATP6V0A4Q9HBG4 840 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 STK38LQ9Y2H1 464 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 PIK3R2O00459 728 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 CFHP08603 1231 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 EPHX2P34913 555 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 PLTPP55058 493 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 MTM1Q13496 603 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 EMC2Q15006 297 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 RHPN2Q8IUC4 686 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 PARD3BQ8TEW8 1205 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 YIPF3Q9GZM5 350 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 NXF1Q9UBU9 619 aaKnown RBP15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 PNMA2Q9UL42 364 aa15.46■□□□□ 0.07
SHROOM1-208ENST00000617339 VIMP08670 466 aaKnown RBP15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 KCNA2P16389 499 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 PIK3CAP42336 1068 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 TFAMQ00059 246 aaKnown RBP15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 C1orf220Q5T0J3 134 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 KRT39Q6A163 491 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 SLC39A4Q6P5W5 647 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 TAX1BP1Q86VP1 789 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 ASAP3Q8TDY4 903 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 LMBR1Q8WVP7 490 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 SPIRE2Q8WWL2 714 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 ELAC2Q9BQ52 826 aaKnown RBP15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 MSTO1Q9BUK6 570 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 DMAC2Q9NW81 257 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 RAB20Q9NX57 234 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 EXOC7Q9UPT5 735 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 ATP8A1Q9Y2Q0 1164 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 FZD9O00144 591 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 PGRMC1O00264 195 aaKnown RBP15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 ANP32DO95626 131 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 JAM2P57087 298 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 HSDL1Q3SXM5 330 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 MIS18BP1Q6P0N0 1132 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 B3GNT9Q6UX72 402 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 CCDC125Q86Z20 511 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 KCNV2Q8TDN2 545 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 ALG3Q92685 438 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 PRCCQ92733 491 aaPredicted RBP15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 PDGFCQ9NRA1 345 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 DIAPH2O60879 1101 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 FBXL13Q8NEE6 735 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 GPR88Q9GZN0 384 aa15.45■□□□□ 0.06
SHROOM1-208ENST00000617339 TCRBV7S2A1N4TA0A589 114 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 COMTP21964 271 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 TCF7P36402 384 aaPredicted RBP15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 TNFSF9P41273 254 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 TMEM62Q0P6H9 643 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 ZNF572Q7Z3I7 529 aaPredicted RBP15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 RNF149Q8NC42 400 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 C11orf70Q9BRQ4 267 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 NUP85Q9BW27 656 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 SLC12A6Q9UHW9 1150 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 PCDHGC5Q9Y5F6 944 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 TNFRSF8P28908 595 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 SFNP31947 248 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 HSPA9P38646 679 aaKnown RBP15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 ADCY1Q08828 1119 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 CEP120Q8N960 986 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 CCDC197Q8NCU1 140 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 C1orf54Q8WWF1 131 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 RUBCNQ92622 972 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 AGO2Q9UKV8 859 aaKnown RBP15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 PCDHB4Q9Y5E5 795 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 WEE2P0C1S8 567 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 CALRP27797 417 aaKnown RBP15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 PDE6CP51160 858 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 STAT5BP51692 787 aa15.44■□□□□ 0.06
SHROOM1-208ENST00000617339 WDR44Q5JSH3 913 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms