RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 MAPTP10636 758 aaKnown RBP12.62□□□□□ -0.39
LINC00539-204ENST00000608957 AFMP43652 599 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 CLCN4P51793 760 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 NCKAP1LP55160 1127 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 DSG1Q02413 1049 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 TUSC3Q13454 348 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 DHX8Q14562 1220 aaKnown RBP12.62□□□□□ -0.39
LINC00539-204ENST00000608957 CBX2Q14781 532 aaPredicted RBP12.62□□□□□ -0.39
LINC00539-204ENST00000608957 GLRA4Q5JXX5 417 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 RARS2Q5T160 578 aaKnown RBP12.62□□□□□ -0.39
LINC00539-204ENST00000608957 CD300LGQ6UXG3 332 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 ALKAL1Q6UXT8 129 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 ZBTB33Q86T24 672 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 GPBP1Q86WP2 473 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 TMEM130Q8N3G9 435 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 HASPINQ8TF76 798 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 RAD54LQ92698 747 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 PPP1R10Q96QC0 940 aaKnown RBP12.62□□□□□ -0.39
LINC00539-204ENST00000608957 FIZ1Q96SL8 496 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 COLEC11Q9BWP8 271 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 PHF7Q9BWX1 381 aaPredicted RBP12.62□□□□□ -0.39
LINC00539-204ENST00000608957 MRPL4Q9BYD3 311 aaKnown RBP12.62□□□□□ -0.39
LINC00539-204ENST00000608957 POMKQ9H5K3 350 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 C17orf75Q9HAS0 396 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 CHST7Q9NS84 486 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 ADAM28Q9UKQ2 775 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 NOTCH4Q99466 2003 aa12.62□□□□□ -0.39
LINC00539-204ENST00000608957 SMC2O95347 1197 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 THP07101 528 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 HOXB8P17481 243 aaPredicted RBP12.61□□□□□ -0.39
LINC00539-204ENST00000608957 GRM5P41594 1212 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 GLUD2P49448 558 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 ZNF131P52739 623 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 OSTNP61366 133 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 SOX4Q06945 474 aaPredicted RBP12.61□□□□□ -0.39
LINC00539-204ENST00000608957 GIT2Q14161 759 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 HSP90AA2PQ14568 343 aaPredicted RBP12.61□□□□□ -0.39
LINC00539-204ENST00000608957 ZNF568Q3ZCX4 644 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 XKR4Q5GH76 650 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 RNF135Q8IUD6 432 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 SMARCE1Q969G3 411 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 ZMAT2Q96NC0 199 aaKnown RBP12.61□□□□□ -0.39
LINC00539-204ENST00000608957 LRFN3Q9BTN0 628 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 GOLGA2P5Q9HBQ8 144 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 RXFP1Q9HBX9 757 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 MRPL17Q9NRX2 175 aaKnown RBP12.61□□□□□ -0.39
LINC00539-204ENST00000608957 ANO10Q9NW15 660 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 KCND2Q9NZV8 630 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 MUTYHQ9UIF7 546 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 PCDHA5Q9Y5H7 936 aa12.61□□□□□ -0.39
LINC00539-204ENST00000608957 TEX28O15482 410 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 MYL1P05976 194 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 URODP06132 367 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 SRGAP2BP0DMP2 458 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 MCF2P10911 925 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 HARSP12081 509 aaKnown RBP12.6□□□□□ -0.39
LINC00539-204ENST00000608957 SP100P23497 879 aaPredicted RBP12.6□□□□□ -0.39
LINC00539-204ENST00000608957 KLRC2P26717 231 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 NLRP12P59046 1061 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 DPYDQ12882 1025 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 BMS1Q14692 1282 aaKnown RBP12.6□□□□□ -0.39
LINC00539-204ENST00000608957 ANO6Q4KMQ2 910 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 SEZ6Q53EL9 994 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 RTP2Q5QGT7 225 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 MPZL3Q6UWV2 235 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 C3orf58Q8NDZ4 430 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 LARP4BQ92615 738 aaKnown RBP12.6□□□□□ -0.39
LINC00539-204ENST00000608957 STAMQ92783 540 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 KCNN1Q92952 543 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 RPGRIP1Q96KN7 1286 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 SNX27Q96L92 541 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 FBXL18Q96ME1 805 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 POP1Q99575 1024 aaKnown RBP12.6□□□□□ -0.39
LINC00539-204ENST00000608957 EMILIN2Q9BXX0 1053 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 RBSNQ9H1K0 784 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 ADAM7Q9H2U9 754 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 KBTBD4Q9NVX7 518 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 STK39Q9UEW8 545 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 MAN1B1Q9UKM7 699 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 ODF2LQ9ULJ1 636 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 SCN1AP35498 2009 aa12.6□□□□□ -0.39
LINC00539-204ENST00000608957 SMIM28A0A1B0GU29 152 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 BIN1O00499 593 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 DCXO43602 365 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 GPR37L1O60883 481 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 TADA2AO75478 443 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 CAVIN2O95810 425 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 MYBP10242 640 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 RPL17P18621 184 aaKnown RBP12.59□□□□□ -0.39
LINC00539-204ENST00000608957 COL9A1P20849 921 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 HERC4Q5GLZ8 1057 aaPredicted RBP12.59□□□□□ -0.39
LINC00539-204ENST00000608957 L1TD1Q5T7N2 865 aaKnown RBP12.59□□□□□ -0.39
LINC00539-204ENST00000608957 KIAA1841Q6NSI8 718 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 SLC39A4Q6P5W5 647 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 PRSS55Q6UWB4 352 aaPredicted RBP12.59□□□□□ -0.39
LINC00539-204ENST00000608957 HAUS6Q7Z4H7 955 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 GLYCTKQ8IVS8 523 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 TRIML1Q8N9V2 468 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 SPATA20Q8TB22 786 aa12.59□□□□□ -0.39
LINC00539-204ENST00000608957 C1QTNF1Q9BXJ1 281 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms