RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 CRELD2Q6UXH1 353 aaPredicted RBP16.57■□□□□ 0.24
LIG1-219ENST00000600055 STXBP4Q6ZWJ1 553 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 NELFCDQ8IXH7 590 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 RNF168Q8IYW5 571 aaPredicted RBP16.57■□□□□ 0.24
LIG1-219ENST00000600055 ZNF507Q8TCN5 953 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 SCFD1Q8WVM8 642 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 PPP2R3CQ969Q6 453 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 SAAL1Q96ER3 474 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 B3GALT6Q96L58 329 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 CBWD1Q9BRT8 395 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 HERC2P3Q9BVR0 1158 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 PCIF1Q9H4Z3 704 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 TMEM206Q9H813 350 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 PLEKHA5Q9HAU0 1116 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 EXOC1Q9NV70 894 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 TUBGCP4Q9UGJ1 667 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 COG5Q9UP83 839 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 MYO7AQ13402 2215 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.56■□□□□ 0.24
LIG1-219ENST00000600055 GOLGA8IPA6NC78 632 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 GOLGA8JA6NMD2 632 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 C2CD2LO14523 706 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 SOD2P04179 222 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 RPN1P04843 607 aaKnown RBP16.56■□□□□ 0.24
LIG1-219ENST00000600055 KCNA5P22460 613 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 LTBRP36941 435 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 PPP2R3AQ06190 1150 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 DLX2Q07687 328 aaPredicted RBP16.56■□□□□ 0.24
LIG1-219ENST00000600055 STK4Q13043 487 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 ADAM15Q13444 863 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 PTPN14Q15678 1187 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 CTC1Q2NKJ3 1217 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 CD300LGQ6UXG3 332 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 KIAA0895Q8NCT3 520 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 C3orf58Q8NDZ4 430 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 VN1R2Q8NFZ6 395 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 PABPC5Q96DU9 382 aaKnown RBP16.56■□□□□ 0.24
LIG1-219ENST00000600055 KIF12Q96FN5 646 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 FAM213AQ9BRX8 229 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 SLC38A7Q9NVC3 462 aa16.56■□□□□ 0.24
LIG1-219ENST00000600055 H3BQ06 376 aaPredicted RBP16.55■□□□□ 0.24
LIG1-219ENST00000600055 TGFB1I1O43294 461 aa16.55■□□□□ 0.24
LIG1-219ENST00000600055 GLP2RO95838 553 aa16.55■□□□□ 0.24
LIG1-219ENST00000600055 MYL1P05976 194 aa16.55■□□□□ 0.24
LIG1-219ENST00000600055 ADRB2P07550 413 aa16.55■□□□□ 0.24
LIG1-219ENST00000600055 GARTP22102 1010 aa16.55■□□□□ 0.24
LIG1-219ENST00000600055 GUCY2FP51841 1108 aa16.55■□□□□ 0.24
LIG1-219ENST00000600055 WNT7BP56706 349 aa16.55■□□□□ 0.24
LIG1-219ENST00000600055 FAM160A1Q05DH4 1040 aa16.55■□□□□ 0.24
LIG1-219ENST00000600055 UPP1Q16831 310 aa16.55■□□□□ 0.24
LIG1-219ENST00000600055 JADE1Q6IE81 842 aa16.55■□□□□ 0.24
LIG1-219ENST00000600055 ARMCX5Q6P1M9 558 aa16.55■□□□□ 0.24
LIG1-219ENST00000600055 EFHBQ8N7U6 833 aa16.55■□□□□ 0.24
LIG1-219ENST00000600055 NOC3LQ8WTT2 800 aaKnown RBP16.55■□□□□ 0.24
LIG1-219ENST00000600055 TULP1O00294 542 aaPredicted RBP16.54■□□□□ 0.24
LIG1-219ENST00000600055 PODXLO00592 558 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 CLIC2O15247 247 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 NCK2O43639 380 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 LILRB3O75022 631 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 CLASP2O75122 1294 aaKnown RBP16.54■□□□□ 0.24
LIG1-219ENST00000600055 TBX10O75333 385 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 B3GAT3O94766 335 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 NFICP08651 508 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 BRCC3P46736 316 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 KCNQ1P51787 676 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 MRPS5P82675 430 aaKnown RBP16.54■□□□□ 0.24
LIG1-219ENST00000600055 PNOCQ13519 176 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 BMS1Q14692 1282 aaKnown RBP16.54■□□□□ 0.24
LIG1-219ENST00000600055 ZBTB6Q15916 424 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 BMT2Q1RMZ1 405 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 KIAA0319Q5VV43 1072 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 LLGL2Q6P1M3 1020 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 DCLRE1AQ6PJP8 1040 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 TMEM87AQ8NBN3 555 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 ATXN2LQ8WWM7 1075 aaKnown RBP16.54■□□□□ 0.24
LIG1-219ENST00000600055 UROC1Q96N76 676 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 CHST7Q9NS84 486 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 BARX2Q9UMQ3 279 aaPredicted RBP16.54■□□□□ 0.24
LIG1-219ENST00000600055 IRAK3Q9Y616 596 aa16.54■□□□□ 0.24
LIG1-219ENST00000600055 SF3B1O75533 1304 aaKnown RBP eCLIP16.53■□□□□ 0.24
LIG1-219ENST00000600055 UBE4BO95155 1302 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 TMEM189-UBE2V1I3L0A0 370 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 I3L4J1 428 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 URODP06132 367 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 GLUD2P49448 558 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 DSG1Q02413 1049 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 PSMD2Q13200 908 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 CLUL1Q15846 466 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 USP41Q3LFD5 358 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 FAM171A1Q5VUB5 890 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 KANK3Q6NY19 840 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 ERCC4Q92889 916 aaPredicted RBP16.53■□□□□ 0.24
LIG1-219ENST00000600055 DDX27Q96GQ7 796 aaKnown RBP16.53■□□□□ 0.24
LIG1-219ENST00000600055 IPO9Q96P70 1041 aaKnown RBP16.53■□□□□ 0.24
LIG1-219ENST00000600055 ASB2Q96Q27 587 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 CDCA3Q99618 268 aaPredicted RBP16.53■□□□□ 0.24
LIG1-219ENST00000600055 MRPL17Q9NRX2 175 aaKnown RBP16.53■□□□□ 0.24
LIG1-219ENST00000600055 AGPAT3Q9NRZ7 376 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 CLEC1BQ9P126 229 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 STK39Q9UEW8 545 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms