RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.38■□□□□ 0.21
VRK3-218ENST00000600031 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.38■□□□□ 0.21
VRK3-218ENST00000600031 APEX2Q9UBZ4 518 aa16.38■□□□□ 0.21
VRK3-218ENST00000600031 SASH3O75995 380 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 PLEKP08567 350 aaPredicted RBP16.37■□□□□ 0.21
VRK3-218ENST00000600031 RAPGEF1Q13905 1077 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 WHAMMP3Q1A5X7 153 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 SFMBT2Q5VUG0 894 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 SLC35F6Q8N357 371 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 MSANTD4Q8NCY6 345 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 OR5B17Q8NGF7 314 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 FAM212AQ96EL1 285 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 FUT8Q9BYC5 575 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 UNC93B1Q9H1C4 597 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 NUCKS1Q9H1E3 243 aaKnown RBP16.37■□□□□ 0.21
VRK3-218ENST00000600031 DNAJC12Q9UKB3 198 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 FRMPD3Q5JV73 1810 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 MOXD2PA6NHM9 499 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 CABYRO75952 493 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 MYCP01106 439 aaPredicted RBP16.37■□□□□ 0.21
VRK3-218ENST00000600031 TUBBP07437 444 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 JAM2P57087 298 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 CDK17Q00537 523 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 SMC1AQ14683 1233 aaKnown RBP16.37■□□□□ 0.21
VRK3-218ENST00000600031 ZACNQ401N2 412 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 TDRD10Q5VZ19 366 aaKnown RBP16.37■□□□□ 0.21
VRK3-218ENST00000600031 ARHGEF19Q8IW93 802 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 ACRBPQ8NEB7 543 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 FBXL13Q8NEE6 735 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 SYN2Q92777 582 aaPredicted RBP16.37■□□□□ 0.21
VRK3-218ENST00000600031 SPAG5Q96R06 1193 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 TSEN34Q9BSV6 310 aaKnown RBP16.37■□□□□ 0.21
VRK3-218ENST00000600031 CELF4Q9BZC1 486 aaKnown RBP16.37■□□□□ 0.21
VRK3-218ENST00000600031 NHEJ1Q9H9Q4 299 aaPredicted RBP16.37■□□□□ 0.21
VRK3-218ENST00000600031 RAB20Q9NX57 234 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 ARHGAP20Q9P2F6 1191 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 RAB21Q9UL25 225 aa16.37■□□□□ 0.21
VRK3-218ENST00000600031 MEFVO15553 781 aaPredicted RBP16.36■□□□□ 0.21
VRK3-218ENST00000600031 STAG3L1P0CL83 205 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 MRPS6P82932 125 aaKnown RBP16.36■□□□□ 0.21
VRK3-218ENST00000600031 PTGISQ16647 500 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 LONRF2Q1L5Z9 754 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 ELMO3Q96BJ8 720 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 GLT1D1Q96MS3 346 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 AIPL1Q9NZN9 384 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 CDY2AQ9Y6F7 541 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 A0A0U1RQJ8 604 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 ERLIN1O75477 346 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 CXCL8P10145 99 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 ARHGAP25P42331 645 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 ARID5AQ03989 594 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 PCBP1Q15365 356 aaKnown RBP eCLIP16.36■□□□□ 0.21
VRK3-218ENST00000600031 HGSNATQ68CP4 663 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 SCARA3Q6AZY7 606 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 DNAJC5GQ8N7S2 189 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 ATRIPQ8WXE1 791 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 ADPGKQ9BRR6 497 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 STK33Q9BYT3 514 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 GPR88Q9GZN0 384 aa16.36■□□□□ 0.21
VRK3-218ENST00000600031 RPF1Q9H9Y2 349 aaKnown RBP16.36■□□□□ 0.21
VRK3-218ENST00000600031 UBE2TQ9NPD8 197 aaPredicted RBP16.36■□□□□ 0.21
VRK3-218ENST00000600031 TRMT13Q9NUP7 481 aaKnown RBP16.36■□□□□ 0.21
VRK3-218ENST00000600031 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.36■□□□□ 0.21
VRK3-218ENST00000600031 PUF60Q9UHX1 559 aaKnown RBP16.36■□□□□ 0.21
VRK3-218ENST00000600031 EPN1Q9Y6I3 576 aaPredicted RBP16.36■□□□□ 0.21
VRK3-218ENST00000600031 ANK1P16157 1881 aa16.35■□□□□ 0.21
VRK3-218ENST00000600031 VNN1O95497 513 aa16.35■□□□□ 0.21
VRK3-218ENST00000600031 CLTAP09496 248 aa16.35■□□□□ 0.21
VRK3-218ENST00000600031 OAS2P29728 719 aaKnown RBP16.35■□□□□ 0.21
VRK3-218ENST00000600031 DRAP1Q14919 205 aaPredicted RBP16.35■□□□□ 0.21
VRK3-218ENST00000600031 MTFR1Q15390 333 aa16.35■□□□□ 0.21
VRK3-218ENST00000600031 RSPH3Q86UC2 560 aa16.35■□□□□ 0.21
VRK3-218ENST00000600031 WDR49Q8IV35 697 aa16.35■□□□□ 0.21
VRK3-218ENST00000600031 PI4K2AQ9BTU6 479 aa16.35■□□□□ 0.21
VRK3-218ENST00000600031 MYO6Q9UM54 1294 aa16.35■□□□□ 0.21
VRK3-218ENST00000600031 TRPV2Q9Y5S1 764 aa16.35■□□□□ 0.21
VRK3-218ENST00000600031 A0A1W2PQ45 241 aaPredicted RBP16.34■□□□□ 0.21
VRK3-218ENST00000600031 A0A1W2PQY0 241 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 MAP2K7O14733 419 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 NDUFA10O95299 355 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 NPTXRO95502 500 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 HLA-DRAP01903 254 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 CHRNA1P02708 482 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 CTSHP09668 335 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 BIRC3Q13489 604 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 ARHGAP44Q17R89 818 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 NOTUMQ6P988 496 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 IRF2BP2Q7Z5L9 587 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 RPAINQ86UA6 219 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 EFCAB13Q8IY85 973 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 ARRDC4Q8NCT1 418 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 KAT5Q92993 513 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 EIF2AQ9BY44 585 aaKnown RBP16.34■□□□□ 0.21
VRK3-218ENST00000600031 ANKZF1Q9H8Y5 726 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 NOC2LQ9Y3T9 749 aaKnown RBP16.34■□□□□ 0.21
VRK3-218ENST00000600031 CTAGE15A4D2H0 777 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 F8VZ95 297 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 B4GALT4O60513 344 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 CTAGE8P0CG41 777 aa16.34■□□□□ 0.21
VRK3-218ENST00000600031 EIF4A3P38919 411 aaKnown RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms