RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 TTPALQ9BTX7 342 aa14.29□□□□□ -0.12
LIG1-212ENST00000596549 TOPORSQ9NS56 1045 aaPredicted RBP14.29□□□□□ -0.12
LIG1-212ENST00000596549 LARSQ9P2J5 1176 aaKnown RBP14.29□□□□□ -0.12
LIG1-212ENST00000596549 DAXXQ9UER7 740 aaPredicted RBP14.29□□□□□ -0.12
LIG1-212ENST00000596549 FBXW11Q9UKB1 542 aa14.29□□□□□ -0.12
LIG1-212ENST00000596549 USTQ9Y2C2 406 aa14.29□□□□□ -0.12
LIG1-212ENST00000596549 CCDC195A0A1B0GUA6 201 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 TMEM221A6NGB7 291 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 I3L4J1 428 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 K7ENM7 598 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 M0R296 226 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 FAM189A1O60320 539 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 N4BP1O75113 896 aaKnown RBP14.28□□□□□ -0.12
LIG1-212ENST00000596549 CLUHO75153 1309 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 B3GAT3O94766 335 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 ASGR2P07307 311 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 CXCL8P10145 99 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 KCNE1P15382 129 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 TKTP29401 623 aaKnown RBP14.28□□□□□ -0.12
LIG1-212ENST00000596549 SMTNP53814 917 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 YARSP54577 528 aaKnown RBP14.28□□□□□ -0.12
LIG1-212ENST00000596549 CREMQ03060 361 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 CEBPZQ03701 1054 aaKnown RBP14.28□□□□□ -0.12
LIG1-212ENST00000596549 SIGLEC14Q08ET2 396 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 SLC10A6Q3KNW5 377 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 SLC39A4Q6P5W5 647 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 RSPO2Q6UXX9 243 aaPredicted RBP14.28□□□□□ -0.12
LIG1-212ENST00000596549 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.28□□□□□ -0.12
LIG1-212ENST00000596549 HAUS6Q7Z4H7 955 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 ZDHHC14Q8IZN3 488 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 RASSF8Q8NHQ8 419 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 C18orf25Q96B23 403 aaPredicted RBP14.28□□□□□ -0.12
LIG1-212ENST00000596549 UROC1Q96N76 676 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 ACAP3Q96P50 834 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 TCHPQ9BT92 498 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 RHOBTB2Q9BYZ6 727 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 TUBGCP4Q9UGJ1 667 aa14.28□□□□□ -0.12
LIG1-212ENST00000596549 SRPRBQ9Y5M8 271 aaKnown RBP14.28□□□□□ -0.12
LIG1-212ENST00000596549 PODXLO00592 558 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 STX6O43752 255 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 FAM13AO94988 1023 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 C1RP00736 705 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 PIGRP01833 764 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 PLA2G5P39877 138 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 TNFSF9P41273 254 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 ELAVL2Q12926 359 aaKnown RBP14.27□□□□□ -0.13
LIG1-212ENST00000596549 ZBTB41Q5SVQ8 909 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 BMP8AQ7Z5Y6 402 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 KREMEN2Q8NCW0 462 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 HDAC7Q8WUI4 952 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 SNX21Q969T3 373 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 PLEKHA4Q9H4M7 779 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 PARVGQ9HBI0 331 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 ZDHHC7Q9NXF8 308 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 MTRRQ9UBK8 725 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 SORCS3Q9UPU3 1222 aa14.27□□□□□ -0.13
LIG1-212ENST00000596549 MORC2Q9Y6X9 1032 aaPredicted RBP14.27□□□□□ -0.13
LIG1-212ENST00000596549 A0A087X0B3 334 aa14.26□□□□□ -0.13
LIG1-212ENST00000596549 H0YCG3 227 aa14.26□□□□□ -0.13
LIG1-212ENST00000596549 CLDN3O15551 220 aa14.26□□□□□ -0.13
LIG1-212ENST00000596549 TRAK2O60296 914 aa14.26□□□□□ -0.13
LIG1-212ENST00000596549 ZMYND10O75800 440 aa14.26□□□□□ -0.13
LIG1-212ENST00000596549 NMT1P30419 496 aaKnown RBP14.26□□□□□ -0.13
LIG1-212ENST00000596549 MTMR3Q13615 1198 aa14.26□□□□□ -0.13
LIG1-212ENST00000596549 DCLRE1AQ6PJP8 1040 aa14.26□□□□□ -0.13
LIG1-212ENST00000596549 MAP4K3Q8IVH8 894 aa14.26□□□□□ -0.13
LIG1-212ENST00000596549 MYCT1Q8N699 235 aa14.26□□□□□ -0.13
LIG1-212ENST00000596549 SMG7Q92540 1137 aaKnown RBP14.26□□□□□ -0.13
LIG1-212ENST00000596549 WDR6Q9NNW5 1121 aaKnown RBP14.26□□□□□ -0.13
LIG1-212ENST00000596549 SLC38A7Q9NVC3 462 aa14.26□□□□□ -0.13
LIG1-212ENST00000596549 STK17AQ9UEE5 414 aa14.26□□□□□ -0.13
LIG1-212ENST00000596549 TBX20Q9UMR3 447 aa14.26□□□□□ -0.13
LIG1-212ENST00000596549 ARIH1Q9Y4X5 557 aaPredicted RBP14.26□□□□□ -0.13
LIG1-212ENST00000596549 WDFY4Q6ZS81 3184 aa14.26□□□□□ -0.13
LIG1-212ENST00000596549 SCN1AP35498 2009 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 TTC26A0AVF1 554 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 TISP43B9A030 160 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 HNRNPDLO14979 420 aaKnown RBP14.25□□□□□ -0.13
LIG1-212ENST00000596549 TBCAO75347 108 aaKnown RBP14.25□□□□□ -0.13
LIG1-212ENST00000596549 PDGFBP01127 241 aaPredicted RBP14.25□□□□□ -0.13
LIG1-212ENST00000596549 KRT18P05783 430 aaKnown RBP14.25□□□□□ -0.13
LIG1-212ENST00000596549 NASPP49321 788 aaPredicted RBP14.25□□□□□ -0.13
LIG1-212ENST00000596549 LIG4P49917 911 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 SPAG1Q07617 926 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 ZC2HC1CQ53FD0 456 aaPredicted RBP14.25□□□□□ -0.13
LIG1-212ENST00000596549 SFR1Q86XK3 245 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 BICD1Q96G01 975 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 PRKD2Q9BZL6 878 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 IKZF4Q9H2S9 585 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 ZHX3Q9H4I2 956 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 DPP7Q9UHL4 492 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 KCNG1Q9UIX4 513 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 CDY1Q9Y6F8 540 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 COL4A3Q01955 1670 aa14.25□□□□□ -0.13
LIG1-212ENST00000596549 COL4A2P08572 1712 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 MYMKA6NI61 221 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 PPP1R37O75864 691 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 C8AP07357 584 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 DDIT3P35638 169 aa14.24□□□□□ -0.13
LIG1-212ENST00000596549 VCPP55072 806 aaKnown RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms