RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 SYKP43405 635 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 ACOT2P49753 483 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 CLCNKBP51801 687 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 GUCY2FP51841 1108 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 MRPS5P82675 430 aaKnown RBP12.16□□□□□ -0.46
VRK3-210ENST00000596121 SNW1Q13573 536 aaKnown RBP12.16□□□□□ -0.46
VRK3-210ENST00000596121 SMC1AQ14683 1233 aaKnown RBP12.16□□□□□ -0.46
VRK3-210ENST00000596121 UPP1Q16831 310 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 FAM26FQ5R3K3 315 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 FUT10Q6P4F1 479 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 KRBA2Q6ZNG9 492 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 EP400NLQ6ZTU2 488 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 CEP57L1Q8IYX8 460 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 ENGASEQ8NFI3 743 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 ZNF507Q8TCN5 953 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 MSLNLQ96KJ4 702 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 CBWD1Q9BRT8 395 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 HERC2P3Q9BVR0 1158 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 TOPORSQ9NS56 1045 aaPredicted RBP12.16□□□□□ -0.46
VRK3-210ENST00000596121 CHST7Q9NS84 486 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 TUBGCP4Q9UGJ1 667 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 ADAM28Q9UKQ2 775 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 CIZ1Q9ULV3 898 aaPredicted RBP12.16□□□□□ -0.46
VRK3-210ENST00000596121 BARX2Q9UMQ3 279 aaPredicted RBP12.16□□□□□ -0.46
VRK3-210ENST00000596121 PCDHB13Q9Y5F0 798 aa12.16□□□□□ -0.46
VRK3-210ENST00000596121 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.15□□□□□ -0.46
VRK3-210ENST00000596121 I3L4J1 428 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 C2CD2LO14523 706 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 TGFB1I1O43294 461 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 GADD45BO75293 160 aaPredicted RBP12.15□□□□□ -0.46
VRK3-210ENST00000596121 TADA2AO75478 443 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 ZNF202O95125 648 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 CNPP09543 421 aaKnown RBP12.15□□□□□ -0.46
VRK3-210ENST00000596121 ABCD1P33897 745 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 BRCC3P46736 316 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 STK4Q13043 487 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 CLUL1Q15846 466 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 LEXMQ3ZCV2 418 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 KMT5BQ4FZB7 885 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 RTP2Q5QGT7 225 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 SCARA3Q6AZY7 606 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 LLGL2Q6P1M3 1020 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 DCLRE1AQ6PJP8 1040 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 FMR1NBQ8N0W7 255 aaPredicted RBP12.15□□□□□ -0.46
VRK3-210ENST00000596121 SLC22A17Q8WUG5 538 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 SCFD1Q8WVM8 642 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 SAAL1Q96ER3 474 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 FAM84AQ96KN4 292 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 KLHL5Q96PQ7 755 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 PYM1Q9BRP8 204 aaKnown RBP12.15□□□□□ -0.46
VRK3-210ENST00000596121 PLEKHA5Q9HAU0 1116 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 SLC39A2Q9NP94 309 aa12.15□□□□□ -0.46
VRK3-210ENST00000596121 AGO2Q9UKV8 859 aaKnown RBP12.15□□□□□ -0.46
VRK3-210ENST00000596121 TCF20Q9UGU0 1960 aaKnown RBP12.14□□□□□ -0.47
VRK3-210ENST00000596121 CARNS1A5YM72 827 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 GOLGA8IPA6NC78 632 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 GRXCR2A6NFK2 248 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 GOLGA8JA6NMD2 632 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 PPEF2O14830 753 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 NCK2O43639 380 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 NR1I2O75469 434 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 EPCAMP16422 314 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 DSG1Q02413 1049 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 DPYDQ12882 1025 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 ALCAMQ13740 583 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 TJAP1Q5JTD0 557 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 JADE1Q6IE81 842 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 SLFN12LQ6IEE8 588 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 KANK3Q6NY19 840 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 SYCE2Q6PIF2 218 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 PRSS55Q6UWB4 352 aaPredicted RBP12.14□□□□□ -0.47
VRK3-210ENST00000596121 TMEM184AQ6ZMB5 413 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 KIAA0895Q8NCT3 520 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 POMGNT1Q8WZA1 660 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 NECAB3Q96P71 396 aaPredicted RBP12.14□□□□□ -0.47
VRK3-210ENST00000596121 COL25A1Q9BXS0 654 aaPredicted RBP12.14□□□□□ -0.47
VRK3-210ENST00000596121 PCIF1Q9H4Z3 704 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 RPF1Q9H9Y2 349 aaKnown RBP12.14□□□□□ -0.47
VRK3-210ENST00000596121 RXFP1Q9HBX9 757 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 CHMP5Q9NZZ3 219 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 USP25Q9UHP3 1055 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 EXOC7Q9UPT5 735 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 CITO14578 2027 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 CUL9Q8IWT3 2517 aa12.14□□□□□ -0.47
VRK3-210ENST00000596121 TMEM189-UBE2V1I3L0A0 370 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 PODXLO00592 558 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 TEX28O15482 410 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 ADAM12O43184 909 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 B3GAT3O94766 335 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 NFICP08651 508 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 IL9P15248 144 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 RPL17P18621 184 aaKnown RBP12.13□□□□□ -0.47
VRK3-210ENST00000596121 CA8P35219 290 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 ANP32AP39687 249 aaKnown RBP12.13□□□□□ -0.47
VRK3-210ENST00000596121 GLUD2P49448 558 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 KYAT1Q16773 422 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 USP41Q3LFD5 358 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 FAM171A1Q5VUB5 890 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 RSPO2Q6UXX9 243 aaPredicted RBP12.13□□□□□ -0.47
VRK3-210ENST00000596121 NELFCDQ8IXH7 590 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms