RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 TRADDQ15628 312 aa21.13■□□□□ 0.97
CLIP3-206ENST00000593074 ZBTB41Q5SVQ8 909 aa21.13■□□□□ 0.97
CLIP3-206ENST00000593074 CDCA2Q69YH5 1023 aaPredicted RBP21.13■□□□□ 0.97
CLIP3-206ENST00000593074 ACAD10Q6JQN1 1059 aa21.13■□□□□ 0.97
CLIP3-206ENST00000593074 ZPBP2Q6X784 338 aa21.13■□□□□ 0.97
CLIP3-206ENST00000593074 UBL4BQ8N7F7 174 aa21.13■□□□□ 0.97
CLIP3-206ENST00000593074 ZNF564Q8TBZ8 553 aaPredicted RBP21.13■□□□□ 0.97
CLIP3-206ENST00000593074 CD101Q93033 1021 aa21.13■□□□□ 0.97
CLIP3-206ENST00000593074 ZNF653Q96CK0 615 aa21.13■□□□□ 0.97
CLIP3-206ENST00000593074 CCDC113Q9H0I3 377 aa21.13■□□□□ 0.97
CLIP3-206ENST00000593074 TRPC6Q9Y210 931 aa21.13■□□□□ 0.97
CLIP3-206ENST00000593074 CCL15-CCL14A0A0B4J2E2 113 aa21.12■□□□□ 0.97
CLIP3-206ENST00000593074 MARK3P27448 753 aa21.12■□□□□ 0.97
CLIP3-206ENST00000593074 PTENP60484 403 aa21.12■□□□□ 0.97
CLIP3-206ENST00000593074 POU5F1Q01860 360 aaKnown RBP21.12■□□□□ 0.97
CLIP3-206ENST00000593074 TTLL4Q14679 1199 aa21.12■□□□□ 0.97
CLIP3-206ENST00000593074 CCL15Q16663 113 aa21.12■□□□□ 0.97
CLIP3-206ENST00000593074 ZNF677Q86XU0 584 aa21.12■□□□□ 0.97
CLIP3-206ENST00000593074 EXOC8Q8IYI6 725 aa21.12■□□□□ 0.97
CLIP3-206ENST00000593074 PRPF31Q8WWY3 499 aaKnown RBP21.12■□□□□ 0.97
CLIP3-206ENST00000593074 SEC14L1Q92503 715 aa21.12■□□□□ 0.97
CLIP3-206ENST00000593074 NUP85Q9BW27 656 aa21.12■□□□□ 0.97
CLIP3-206ENST00000593074 PCDHB2Q9Y5E7 798 aa21.12■□□□□ 0.97
CLIP3-206ENST00000593074 ZBTB42B2RXF5 422 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 BTBD19C9JJ37 291 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 BIRC3Q13489 604 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 PPP2R5EQ16537 467 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 IER5Q5VY09 327 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 MAATS1Q7Z4T9 603 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 CCDC26Q8TAB7 109 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 ATP8B4Q8TF62 1192 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 CHORDC1Q9UHD1 332 aaPredicted RBP21.11■□□□□ 0.97
CLIP3-206ENST00000593074 AMACRQ9UHK6 382 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 IGKV6-21A0A0C4DH24 114 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 HSF2BPO75031 334 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 COMTP21964 271 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 FKBP1BP68106 108 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 MESDQ14696 234 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 TCP11Q8WWU5 503 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 KRT35Q92764 455 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 COPS5Q92905 334 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 WNT8AQ9H1J5 351 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 PDGFCQ9NRA1 345 aa21.11■□□□□ 0.97
CLIP3-206ENST00000593074 FAM189A1O60320 539 aa21.1■□□□□ 0.97
CLIP3-206ENST00000593074 MSCO60682 206 aa21.1■□□□□ 0.97
CLIP3-206ENST00000593074 UNGP13051 313 aaPredicted RBP21.1■□□□□ 0.97
CLIP3-206ENST00000593074 PEX5P50542 639 aa21.1■□□□□ 0.97
CLIP3-206ENST00000593074 BPIFB4P59827 614 aa21.1■□□□□ 0.97
CLIP3-206ENST00000593074 MKRN3Q13064 507 aaKnown RBP21.1■□□□□ 0.97
CLIP3-206ENST00000593074 MKRN4PQ13434 485 aaPredicted RBP21.1■□□□□ 0.97
CLIP3-206ENST00000593074 ARMCX2Q7L311 632 aa21.1■□□□□ 0.97
CLIP3-206ENST00000593074 TRIM50Q86XT4 487 aa21.1■□□□□ 0.97
CLIP3-206ENST00000593074 SMARCAD1Q9H4L7 1026 aa21.1■□□□□ 0.97
CLIP3-206ENST00000593074 NR2E1Q9Y466 385 aa21.1■□□□□ 0.97
CLIP3-206ENST00000593074 GOLGA6L10A0A0M3HER8 536 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 TMEM110-MUSTN1A8MSY1 372 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 ACO1P21399 889 aaKnown RBP21.09■□□□□ 0.97
CLIP3-206ENST00000593074 MARCKSL1P49006 195 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 SLC26A2P50443 739 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 ZNF211Q13398 564 aaPredicted RBP21.09■□□□□ 0.97
CLIP3-206ENST00000593074 CUL2Q13617 745 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 MXD4Q14582 209 aaPredicted RBP21.09■□□□□ 0.97
CLIP3-206ENST00000593074 PLCB4Q15147 1175 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 ZNF792Q3KQV3 632 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 APOBEC3GQ9HC16 384 aaKnown RBP21.09■□□□□ 0.97
CLIP3-206ENST00000593074 GBA2Q9HCG7 927 aaPredicted RBP21.09■□□□□ 0.97
CLIP3-206ENST00000593074 TTLL13PA6NNM8 815 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 CLDN3O15551 220 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 OPA1O60313 960 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 TOM1L1O75674 476 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 CTNNA1P35221 906 aaKnown RBP21.09■□□□□ 0.97
CLIP3-206ENST00000593074 HSPA9P38646 679 aaKnown RBP21.09■□□□□ 0.97
CLIP3-206ENST00000593074 GCLCP48506 637 aaPredicted RBP21.09■□□□□ 0.97
CLIP3-206ENST00000593074 LMAN1P49257 510 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 GUCY2FP51841 1108 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 LAMTOR4Q0VGL1 99 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 SPOPLQ6IQ16 392 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 ANKRD23Q86SG2 305 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 BRSK2Q8IWQ3 736 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 IQCKQ8N0W5 287 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 BRI3BPQ8WY22 251 aa21.09■□□□□ 0.97
CLIP3-206ENST00000593074 MRPL4Q9BYD3 311 aaKnown RBP21.09■□□□□ 0.97
CLIP3-206ENST00000593074 GOLGA8KD6RF30 607 aa21.08■□□□□ 0.97
CLIP3-206ENST00000593074 TTI1O43156 1089 aa21.08■□□□□ 0.97
CLIP3-206ENST00000593074 HSPA6P17066 643 aa21.08■□□□□ 0.97
CLIP3-206ENST00000593074 CTNNA2P26232 953 aa21.08■□□□□ 0.97
CLIP3-206ENST00000593074 ADORA2AP29274 412 aa21.08■□□□□ 0.97
CLIP3-206ENST00000593074 GRM1Q13255 1194 aa21.08■□□□□ 0.97
CLIP3-206ENST00000593074 ZIM3Q96PE6 472 aa21.08■□□□□ 0.97
CLIP3-206ENST00000593074 RUFY1Q96T51 708 aa21.08■□□□□ 0.97
CLIP3-206ENST00000593074 AVENQ9NQS1 362 aaPredicted RBP21.08■□□□□ 0.97
CLIP3-206ENST00000593074 CNOT8Q9UFF9 292 aaKnown RBP21.08■□□□□ 0.97
CLIP3-206ENST00000593074 CNTN6Q9UQ52 1028 aa21.08■□□□□ 0.97
CLIP3-206ENST00000593074 CCDC66A2RUB6 948 aa21.08■□□□□ 0.96
CLIP3-206ENST00000593074 STRNO43815 780 aa21.08■□□□□ 0.96
CLIP3-206ENST00000593074 CALCAP01258 141 aa21.08■□□□□ 0.96
CLIP3-206ENST00000593074 CLTAP09496 248 aa21.08■□□□□ 0.96
CLIP3-206ENST00000593074 TBXAS1P24557 533 aaPredicted RBP21.08■□□□□ 0.96
CLIP3-206ENST00000593074 HLTFQ14527 1009 aaKnown RBP eCLIP21.08■□□□□ 0.96
CLIP3-206ENST00000593074 TMEM63BQ5T3F8 832 aa21.08■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms