RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 BOD1Q96IK1 185 aa4.58□□□□□ -1.68
VPS4B-203ENST00000588323 SEMA4GQ9NTN9 838 aa4.58□□□□□ -1.68
VPS4B-203ENST00000588323 TMEM74BQ9NUR3 256 aa4.58□□□□□ -1.68
VPS4B-203ENST00000588323 PDE8AO60658 829 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 ULK1O75385 1050 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 GPANK1O95872 356 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 BPIP17213 487 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 FGFR4P22455 802 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 HSD11B2P80365 405 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 NHLH1Q02575 133 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 DHCR24Q15392 516 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 Q6ZVL8 140 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 CLRN3Q8NCR9 226 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 ACTRT2Q8TDY3 377 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 AUTS2Q8WXX7 1259 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 AIFM2Q9BRQ8 373 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 SENP6Q9GZR1 1112 aaPredicted RBP4.57□□□□□ -1.68
VPS4B-203ENST00000588323 IFT22Q9H7X7 185 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 KCNE5Q9UJ90 142 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 MAPRE3Q9UPY8 281 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 DMTF1Q9Y222 760 aa4.57□□□□□ -1.68
VPS4B-203ENST00000588323 MTO1Q9Y2Z2 717 aaKnown RBP4.57□□□□□ -1.68
VPS4B-203ENST00000588323 AATKQ6ZMQ8 1374 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 MYADML2A6NDP7 307 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 MGST3O14880 152 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 MATN4O95460 622 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 MYCLP1P12525 358 aaPredicted RBP4.56□□□□□ -1.68
VPS4B-203ENST00000588323 GCSHP23434 173 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 SREBF1P36956 1147 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 CACNA2D1P54289 1103 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 MRPS9P82933 396 aaKnown RBP4.56□□□□□ -1.68
VPS4B-203ENST00000588323 UBXN2BQ14CS0 331 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 ADRM1Q16186 407 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 EPHA10Q5JZY3 1008 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 STON2Q8WXE9 905 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 FATE1Q969F0 183 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 PTCD3Q96EY7 689 aaKnown RBP4.56□□□□□ -1.68
VPS4B-203ENST00000588323 TTC1Q99614 292 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 HEPHQ9BQS7 1158 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 GREM2Q9H772 168 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 LANCL2Q9NS86 450 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 FOXJ2Q9P0K8 574 aa4.56□□□□□ -1.68
VPS4B-203ENST00000588323 MRPL42Q9Y6G3 142 aaKnown RBP4.56□□□□□ -1.68
VPS4B-203ENST00000588323 A0A087X0B3 334 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 WNT10BO00744 389 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 NEMP1O14524 444 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 ZEB2O60315 1214 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 ERN1O75460 977 aaKnown RBP4.55□□□□□ -1.68
VPS4B-203ENST00000588323 RBMXL2O75526 392 aaKnown RBP4.55□□□□□ -1.68
VPS4B-203ENST00000588323 MTHFD2P13995 350 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 MUM1L1Q5H9M0 696 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 PAPD7Q5XG87 772 aaKnown RBP4.55□□□□□ -1.68
VPS4B-203ENST00000588323 ZNF529Q6P280 563 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 THNSL2Q86YJ6 484 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 TSPEARQ8WU66 669 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 NACC2Q96BF6 587 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 ACE2Q9BYF1 805 aaPredicted RBP4.55□□□□□ -1.68
VPS4B-203ENST00000588323 QRSL1Q9H0R6 528 aaKnown RBP4.55□□□□□ -1.68
VPS4B-203ENST00000588323 IFT122Q9HBG6 1241 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 RBM12Q9NTZ6 932 aaKnown RBP4.55□□□□□ -1.68
VPS4B-203ENST00000588323 FAM30AQ9NZY2 134 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 SLC17A6Q9P2U8 582 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 USP25Q9UHP3 1055 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 ZBTB21Q9ULJ3 1066 aa4.55□□□□□ -1.68
VPS4B-203ENST00000588323 GOLGA8AA7E2F4 631 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 TEX33O43247 280 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 ERBB2P04626 1255 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 CKBP12277 381 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 SLC6A2P23975 617 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 ALDH1A3P47895 512 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 ID4P47928 161 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 VAV2P52735 878 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 CYP2A13Q16696 494 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 MUM1Q2TAK8 710 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 OTUD7BQ6GQQ9 843 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 DDX46Q7L014 1031 aaKnown RBP4.54□□□□□ -1.68
VPS4B-203ENST00000588323 KIAA0907Q7Z7F0 614 aaPredicted RBP4.54□□□□□ -1.68
VPS4B-203ENST00000588323 COLGALT2Q8IYK4 626 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 TGFBRAP1Q8WUH2 860 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 PDLIM2Q96JY6 352 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 KLK15Q9H2R5 256 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 LDAHQ9H6V9 325 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 TMEM140Q9NV12 185 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 KCTD5Q9NXV2 234 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 AJAP1Q9UKB5 411 aaPredicted RBP4.54□□□□□ -1.68
VPS4B-203ENST00000588323 APOBEC2Q9Y235 224 aaKnown RBP4.54□□□□□ -1.68
VPS4B-203ENST00000588323 SIK3Q9Y2K2 1263 aa4.54□□□□□ -1.68
VPS4B-203ENST00000588323 CCDC78A2IDD5 438 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 LRRC3CA6NJW4 275 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 C1QL1O75973 258 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 ENDOD1O94919 500 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 PRSS23O95084 383 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 ALAS1P13196 640 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 GUCY1A2P33402 732 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 FOXF2Q12947 444 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 NOMO1Q15155 1222 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 AKNAD1Q5T1N1 836 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 SRRM1Q8IYB3 904 aaKnown RBP4.53□□□□□ -1.68
VPS4B-203ENST00000588323 CASKIN2Q8WXE0 1202 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 ADI1Q9BV57 179 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms