RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 ZMYM2Q9UBW7 1377 aa12.8□□□□□ -0.36
LIG3-207ENST00000586119 OTOGLQ3ZCN5 2332 aa12.79□□□□□ -0.36
LIG3-207ENST00000586119 GPR179Q6PRD1 2367 aa12.79□□□□□ -0.36
LIG3-207ENST00000586119 SMIM28A0A1B0GU29 152 aa12.79□□□□□ -0.36
LIG3-207ENST00000586119 FAM170BA6NMN3 283 aa12.79□□□□□ -0.36
LIG3-207ENST00000586119 MEFVO15553 781 aaPredicted RBP12.79□□□□□ -0.36
LIG3-207ENST00000586119 CCT6AP40227 531 aaKnown RBP12.79□□□□□ -0.36
LIG3-207ENST00000586119 MLF2Q15773 248 aaPredicted RBP12.79□□□□□ -0.36
LIG3-207ENST00000586119 UPP1Q16831 310 aa12.79□□□□□ -0.36
LIG3-207ENST00000586119 ATF7IP2Q5U623 682 aa12.79□□□□□ -0.36
LIG3-207ENST00000586119 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.79□□□□□ -0.36
LIG3-207ENST00000586119 TAS1R3Q7RTX0 852 aa12.79□□□□□ -0.36
LIG3-207ENST00000586119 NPAS3Q8IXF0 933 aa12.79□□□□□ -0.36
LIG3-207ENST00000586119 ADPGKQ9BRR6 497 aa12.79□□□□□ -0.36
LIG3-207ENST00000586119 BHMT2Q9H2M3 363 aa12.79□□□□□ -0.36
LIG3-207ENST00000586119 KIAA1024Q9UPX6 916 aa12.79□□□□□ -0.36
LIG3-207ENST00000586119 CITO14578 2027 aa12.79□□□□□ -0.36
LIG3-207ENST00000586119 ZNF292O60281 2723 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 KANSL1LA0AUZ9 987 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 SHISA7A6NL88 538 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 PP2D1A8MPX8 630 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 E9PMD0 336 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 XYLBO75191 536 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 SEC24AO95486 1093 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 CDC25AP30304 524 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 HOXA9P31269 272 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 ARPP19P56211 112 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 UBXN2BQ14CS0 331 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 IL17AQ16552 155 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 C8orf34Q49A92 452 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 PABPC1LQ4VXU2 614 aaKnown RBP12.78□□□□□ -0.36
LIG3-207ENST00000586119 TTC38Q5R3I4 469 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 TANGO2Q6ICL3 276 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 ALKAL1Q6UXT8 129 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 DAW1Q8N136 415 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 TCEAL4Q96EI5 215 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 C8orf76Q96K31 380 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 ZBTB45Q96K62 511 aaPredicted RBP12.78□□□□□ -0.36
LIG3-207ENST00000586119 DDX23Q9BUQ8 820 aaKnown RBP12.78□□□□□ -0.36
LIG3-207ENST00000586119 DDX19AQ9NUU7 478 aaKnown RBP12.78□□□□□ -0.36
LIG3-207ENST00000586119 ZFP37Q9Y6Q3 630 aaPredicted RBP12.78□□□□□ -0.36
LIG3-207ENST00000586119 PATJQ8NI35 1801 aa12.78□□□□□ -0.36
LIG3-207ENST00000586119 DMXL1Q9Y485 3027 aa12.77□□□□□ -0.36
LIG3-207ENST00000586119 MED19A0JLT2 244 aaPredicted RBP12.77□□□□□ -0.37
LIG3-207ENST00000586119 WDR27A2RRH5 827 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 CCDC169A6NNP5 214 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 SFI1A8K8P3 1242 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 TMEM189-UBE2V1I3L0A0 370 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 K7ERI5 159 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 RHOP08100 348 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 CEBPBP17676 345 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 TOB1P50616 345 aaPredicted RBP12.77□□□□□ -0.37
LIG3-207ENST00000586119 PEX3P56589 373 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 ELAVL2Q12926 359 aaKnown RBP12.77□□□□□ -0.37
LIG3-207ENST00000586119 FZD5Q13467 585 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 SAFBQ15424 915 aaKnown RBP eCLIP12.77□□□□□ -0.37
LIG3-207ENST00000586119 UVSSAQ2YD98 709 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 DCAF4L1Q3SXM0 396 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 SEZ6Q53EL9 994 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 TSSK4Q6SA08 328 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 KCNK18Q7Z418 384 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 HS6ST3Q8IZP7 471 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 SUMF1Q8NBK3 374 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 ERMNQ8TAM6 284 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 C18orf25Q96B23 403 aaPredicted RBP12.77□□□□□ -0.37
LIG3-207ENST00000586119 IFT74Q96LB3 600 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 ACO2Q99798 780 aaKnown RBP12.77□□□□□ -0.37
LIG3-207ENST00000586119 TARS2Q9BW92 718 aaKnown RBP12.77□□□□□ -0.37
LIG3-207ENST00000586119 CDT1Q9H211 546 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 PTPRHQ9HD43 1115 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 SPATA6Q9NWH7 488 aaPredicted RBP12.77□□□□□ -0.37
LIG3-207ENST00000586119 TNFSF13BQ9Y275 285 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 MRPS23Q9Y3D9 190 aaKnown RBP12.77□□□□□ -0.37
LIG3-207ENST00000586119 BACE2Q9Y5Z0 518 aa12.77□□□□□ -0.37
LIG3-207ENST00000586119 MYH11P35749 1972 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 F5P12259 2224 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 ABLIM1O14639 778 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 TBC1D4O60343 1298 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 GJA1P17302 382 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 TARSP26639 723 aaKnown RBP12.76□□□□□ -0.37
LIG3-207ENST00000586119 GRM5P41594 1212 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 CCR2P41597 374 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 NPTX2P47972 431 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 RBM25P49756 843 aaKnown RBP12.76□□□□□ -0.37
LIG3-207ENST00000586119 FOXK2Q01167 660 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 ROR1Q01973 937 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 CSTF1Q05048 431 aaKnown RBP12.76□□□□□ -0.37
LIG3-207ENST00000586119 GRM2Q14416 872 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 PPP2R5AQ15172 486 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 XKR4Q5GH76 650 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 VARS2Q5ST30 1063 aaKnown RBP12.76□□□□□ -0.37
LIG3-207ENST00000586119 MTSS1LQ765P7 747 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 SHDQ96IW2 340 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 ZSWIM3Q96MP5 696 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 HINFPQ9BQA5 517 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 RUSC1Q9BVN2 902 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 FOXP1Q9H334 677 aaPredicted RBP12.76□□□□□ -0.37
LIG3-207ENST00000586119 SEMA4AQ9H3S1 761 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 LTB4R2Q9NPC1 389 aa12.76□□□□□ -0.37
LIG3-207ENST00000586119 HEBP1Q9NRV9 189 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms