RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 TLR9Q9NR96 1032 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 RBAKQ9NYW8 714 aaPredicted RBP10.39□□□□□ -0.75
CCDC40-214ENST00000575431 HSPBP1Q9NZL4 362 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 KIAA1468Q9P260 1216 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 HCSTQ9UBK5 93 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 SSX2IPQ9Y2D8 614 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 EPOPA6NHQ4 379 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 LACTBL1A8MY62 500 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 NT5C1B-RDH14C9J2C7 533 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 RFXAPO00287 272 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 PSMA7O14818 248 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 GRM6O15303 877 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 TRAPPC3O43617 180 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 EXOC3O60645 756 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 TADA2AO75478 443 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 LRPAP1P30533 357 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 ADGRE1Q14246 886 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 EDRF1Q3B7T1 1238 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 GLRA4Q5JXX5 417 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 FOXR2Q6PJQ5 311 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 BEST2Q8NFU1 509 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 MICAL1Q8TDZ2 1067 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 GDPD5Q8WTR4 605 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 CACTINQ8WUQ7 758 aaKnown RBP10.38□□□□□ -0.75
CCDC40-214ENST00000575431 FAM212AQ96EL1 285 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 KIF12Q96FN5 646 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 DHTKD1Q96HY7 919 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-214ENST00000575431 ZMAT2Q96NC0 199 aaKnown RBP10.38□□□□□ -0.75
CCDC40-214ENST00000575431 TSG101Q99816 390 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 IKZF4Q9H2S9 585 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 PCIF1Q9H4Z3 704 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 MAN1B1Q9UKM7 699 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 ADAM28Q9UKQ2 775 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 MTCH2Q9Y6C9 303 aa10.38□□□□□ -0.75
CCDC40-214ENST00000575431 PDCD11Q14690 1871 aaKnown RBP10.38□□□□□ -0.75
CCDC40-214ENST00000575431 COL4A4P53420 1690 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-214ENST00000575431 SF3B1O75533 1304 aaKnown RBP eCLIP10.37□□□□□ -0.75
CCDC40-214ENST00000575431 CLIC2O15247 247 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 MAPK13O15264 365 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 NCK2O43639 380 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 B4GALT3O60512 393 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 B3GAT3O94766 335 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 NR3C1P04150 777 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 PRCPP42785 496 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 AP3M2P53677 418 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 LRRC63Q05C16 580 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 ENPEPQ07075 957 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 MORC3Q14149 939 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 TMEM132DQ14C87 1099 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 SNRNP35Q16560 246 aaKnown RBP10.37□□□□□ -0.75
CCDC40-214ENST00000575431 CAMK4Q16566 473 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 UPP1Q16831 310 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 ZBTB41Q5SVQ8 909 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 SPATA1Q5VX52 437 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 CENPPQ6IPU0 288 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 PDXDC1Q6P996 788 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 TMC7Q7Z402 723 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 ADSSL1Q8N142 457 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 SAAL1Q96ER3 474 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 NSUN3Q9H649 340 aaKnown RBP10.37□□□□□ -0.75
CCDC40-214ENST00000575431 DMAC2Q9NW81 257 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 MAPK8IP1Q9UQF2 711 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 FRMD4BQ9Y2L6 1034 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 PRG3Q9Y2Y8 225 aaPredicted RBP10.37□□□□□ -0.75
CCDC40-214ENST00000575431 IRAK3Q9Y616 596 aa10.37□□□□□ -0.75
CCDC40-214ENST00000575431 PLXNA4Q9HCM2 1894 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 TRIP11Q15643 1979 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 BICDL2A1A5D9 508 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 ARHGEF37A1IGU5 675 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 GOLGA8IPA6NC78 632 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 CASTOR2A6NHX0 329 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 GOLGA8JA6NMD2 632 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 MEFVO15553 781 aaPredicted RBP10.36□□□□□ -0.75
CCDC40-214ENST00000575431 EFEMP2O95967 443 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 SOD2P04179 222 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 URODP06132 367 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 CTSAP10619 480 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 NR2F2P24468 414 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 MCM4P33991 863 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 PBX3P40426 434 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 CYP2J2P51589 502 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 CLCNKBP51801 687 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 FKBP3Q00688 224 aaKnown RBP10.36□□□□□ -0.75
CCDC40-214ENST00000575431 ADAM9Q13443 819 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 CAMK1Q14012 370 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 SMC1AQ14683 1233 aaKnown RBP10.36□□□□□ -0.75
CCDC40-214ENST00000575431 PSMD6Q15008 389 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 USP41Q3LFD5 358 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 ZCWPW2Q504Y3 356 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 JADE1Q6IE81 842 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 KIAA1841Q6NSI8 718 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 FUT10Q6P4F1 479 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 CBWD2Q8IUF1 395 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 RNF168Q8IYW5 571 aaPredicted RBP10.36□□□□□ -0.75
CCDC40-214ENST00000575431 VPS52Q8N1B4 723 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 MLKLQ8NB16 471 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 NOC3LQ8WTT2 800 aaKnown RBP10.36□□□□□ -0.75
CCDC40-214ENST00000575431 ERCC4Q92889 916 aaPredicted RBP10.36□□□□□ -0.75
CCDC40-214ENST00000575431 MFSD14AQ96MC6 490 aa10.36□□□□□ -0.75
CCDC40-214ENST00000575431 FNBP1Q96RU3 617 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms