RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 IGDCC4Q8TDY8 1250 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 NUP133Q8WUM0 1156 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 HOXB13Q92826 284 aaPredicted RBP2.43□□□□□ -2.02
CHD3-217ENST00000574022 TNPO1Q92973 898 aaKnown RBP2.43□□□□□ -2.02
CHD3-217ENST00000574022 DYDC2Q96IM9 177 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 UHRF1Q96T88 793 aaPredicted RBP2.43□□□□□ -2.02
CHD3-217ENST00000574022 BARD1Q99728 777 aaKnown RBP2.43□□□□□ -2.02
CHD3-217ENST00000574022 PYM1Q9BRP8 204 aaKnown RBP2.43□□□□□ -2.02
CHD3-217ENST00000574022 SOX7Q9BT81 388 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 SSBP4Q9BWG4 385 aaPredicted RBP2.43□□□□□ -2.02
CHD3-217ENST00000574022 BTBD2Q9BX70 525 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 TRIM54Q9BYV2 358 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 SENP6Q9GZR1 1112 aaPredicted RBP2.43□□□□□ -2.02
CHD3-217ENST00000574022 OR10A5Q9H207 317 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 MRPL46Q9H2W6 279 aaKnown RBP2.43□□□□□ -2.02
CHD3-217ENST00000574022 TBC1D23Q9NUY8 699 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 DTLQ9NZJ0 730 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 HSPBP1Q9NZL4 362 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 MAGEL2Q9UJ55 1249 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 VAV3Q9UKW4 847 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 NOL7Q9UMY1 257 aaKnown RBP2.43□□□□□ -2.02
CHD3-217ENST00000574022 TMX2Q9Y320 296 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 TTLL3Q9Y4R7 772 aa2.43□□□□□ -2.02
CHD3-217ENST00000574022 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.43□□□□□ -2.02
CHD3-217ENST00000574022 MYBBP1AQ9BQG0 1328 aaKnown RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 A0A1W2PR48 441 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 FAM234BA2RU67 622 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 FITM1A5D6W6 292 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 TRIM43BA6NCK2 446 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 AQP12BA6NM10 295 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 CLCA1A8K7I4 914 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 NOTOA8MTQ0 251 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 NT5C1B-RDH14C9J2C7 533 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 PIP5K1BO14986 540 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 HOXC11O43248 304 aaPredicted RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 TMCC2O75069 709 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 TMEM127O75204 238 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SOAT2O75908 522 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 FSBPO95073 299 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 LY86O95711 162 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 NDST3O95803 873 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 AHSGP02765 367 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 AMY1AP04745 511 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 CYBBP04839 570 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 DBHP09172 617 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 PNLIPP16233 465 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 HDCP19113 662 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 MCCP23508 829 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 COL8A1P27658 744 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 THBS2P35442 1172 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 GALK1P51570 392 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 HK2P52789 917 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 ARFIP2P53365 341 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 CLNS1AP54105 237 aaKnown RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 NAP1L1P55209 391 aaKnown RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 POLE2P56282 527 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SOX8P57073 446 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 ANTXR2P58335 489 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 FOXO4P98177 505 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 CD83Q01151 205 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 TLE2Q04725 743 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 MAP3K12Q12852 859 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 MAPK7Q13164 816 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SLC13A2Q13183 592 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 TRPC3Q13507 836 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 RAB32Q13637 225 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 RAB30Q15771 203 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 NBPF8Q3BBV2 869 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SLC45A4Q5BKX6 768 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 FAM133BQ5BKY9 247 aaKnown RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 WDR45BQ5MNZ6 344 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 GPATCH4Q5T3I0 446 aaKnown RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 TSHZ3Q63HK5 1081 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 VASNQ6EMK4 673 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 TANGO2Q6ICL3 276 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SULT6B1Q6IMI4 303 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 PDXDC1Q6P996 788 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 DPP8Q6V1X1 898 aaPredicted RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 DSTYKQ6XUX3 929 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 FASTKD5Q7L8L6 764 aaKnown RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 LRRTM4Q86VH4 590 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 FAM90A1Q86YD7 464 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 CCDC117Q8IWD4 279 aaPredicted RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 FAM126BQ8IXS8 530 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 ADGRG2Q8IZP9 1017 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 OR8H2Q8N162 312 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 GLIS1Q8NBF1 620 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SIMC1Q8NDZ2 872 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 PDZD8Q8NEN9 1154 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 OR5AN1Q8NGI8 311 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 PPP1R14CQ8TAE6 165 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 FAM71BQ8TC56 605 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 STT3BQ8TCJ2 826 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SPPL3Q8TCT6 385 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 OTUD7AQ8TE49 926 aaPredicted RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 IPO4Q8TEX9 1081 aaKnown RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 STYXQ8WUJ0 223 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 SNX33Q8WV41 574 aa2.42□□□□□ -2.02
CHD3-217ENST00000574022 IPCEF1Q8WWN9 437 aaPredicted RBP2.42□□□□□ -2.02
CHD3-217ENST00000574022 TP53INP1Q96A56 240 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms