RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 AFF2P51816 1311 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 A8MUI8 341 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 RALAP11233 206 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 MUTP22033 750 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 SV2AQ7L0J3 742 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 TACO1Q9BSH4 297 aaKnown RBP18.23■□□□□ 0.51
VPS53-215ENST00000573028 NCALDP61601 193 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 DGKZQ13574 1117 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 TMED2Q15363 201 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 TKFCQ3LXA3 575 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 MFSD5Q6N075 450 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 SPATA21Q7Z572 469 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 WHRNQ9P202 907 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 TESPA1A2RU30 521 aaPredicted RBP18.22■□□□□ 0.51
VPS53-215ENST00000573028 FSCN2O14926 492 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 MTA2O94776 668 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 GJB6O95452 261 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 CETPP11597 493 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 CD58P19256 250 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 ITIH2P19823 946 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 ALDH5A1P51649 535 aaPredicted RBP18.22■□□□□ 0.51
VPS53-215ENST00000573028 GTF2BQ00403 316 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 NAA25Q14CX7 972 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 KAZNQ674X7 775 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 SERPINB12Q96P63 405 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 NKIRAS1Q9NYS0 192 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 NINJ2Q9NZG7 142 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 TBX20Q9UMR3 447 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 DHX15O43143 795 aaKnown RBP18.22■□□□□ 0.51
VPS53-215ENST00000573028 SPAG7O75391 227 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 GSTA1P08263 222 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 ALCAMQ13740 583 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 C11orf70Q9BRQ4 267 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 FAM213AQ9BRX8 229 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 TMEM39BQ9GZU3 492 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 KMT5AQ9NQR1 393 aa18.22■□□□□ 0.51
VPS53-215ENST00000573028 HNRNPDLO14979 420 aaKnown RBP18.21■□□□□ 0.51
VPS53-215ENST00000573028 ATP9AO75110 1047 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 RAD17O75943 681 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 NQO1P15559 274 aaKnown RBP18.21■□□□□ 0.51
VPS53-215ENST00000573028 LTBP1Q14766 1721 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 MRIQ9BWK5 157 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 CCDC134Q9H6E4 229 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 RAVER2Q9HCJ3 691 aaKnown RBP18.21■□□□□ 0.51
VPS53-215ENST00000573028 HERC5Q9UII4 1024 aaKnown RBP18.21■□□□□ 0.51
VPS53-215ENST00000573028 SPATA31A6Q5VVP1 1343 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 LY75O60449 1722 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 ATP5DP30049 168 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 NPTX2P47972 431 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 CLEC16AQ2KHT3 1053 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 SLC27A3Q5K4L6 730 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 AGAP11Q8TF27 550 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 RMDN2Q96LZ7 410 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 AGO4Q9HCK5 861 aaKnown RBP18.21■□□□□ 0.51
VPS53-215ENST00000573028 TMEM8AQ9HCN3 771 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 NAALADL1Q9UQQ1 740 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 PI4K2BG5E9Z4 385 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 MRPS9P82933 396 aaKnown RBP18.21■□□□□ 0.51
VPS53-215ENST00000573028 DMP1Q13316 513 aaPredicted RBP18.21■□□□□ 0.51
VPS53-215ENST00000573028 SPOPLQ6IQ16 392 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 DCLK3Q9C098 648 aa18.21■□□□□ 0.51
VPS53-215ENST00000573028 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.21■□□□□ 0.51
VPS53-215ENST00000573028 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.21■□□□□ 0.51
VPS53-215ENST00000573028 ASTN2O75129 1339 aaPredicted RBP18.2■□□□□ 0.5
VPS53-215ENST00000573028 POC1B-GALNT4F8VUJ3 575 aa18.2■□□□□ 0.5
VPS53-215ENST00000573028 NSFP46459 744 aaKnown RBP18.2■□□□□ 0.5
VPS53-215ENST00000573028 TNFAIP8L3Q5GJ75 292 aa18.2■□□□□ 0.5
VPS53-215ENST00000573028 IZUMO3Q5VZ72 239 aa18.2■□□□□ 0.5
VPS53-215ENST00000573028 FITM2Q8N6M3 262 aa18.2■□□□□ 0.5
VPS53-215ENST00000573028 DDX1Q92499 740 aaKnown RBP18.2■□□□□ 0.5
VPS53-215ENST00000573028 EXOC7Q9UPT5 735 aa18.2■□□□□ 0.5
VPS53-215ENST00000573028 KRT16P08779 473 aa18.2■□□□□ 0.5
VPS53-215ENST00000573028 TCEAL1Q15170 157 aa18.2■□□□□ 0.5
VPS53-215ENST00000573028 C12orf50Q8NA57 414 aaPredicted RBP18.2■□□□□ 0.5
VPS53-215ENST00000573028 NSMCE1Q8WV22 266 aa18.2■□□□□ 0.5
VPS53-215ENST00000573028 TAAR1Q96RJ0 339 aa18.2■□□□□ 0.5
VPS53-215ENST00000573028 ZBTB12Q9Y330 459 aaPredicted RBP18.2■□□□□ 0.5
VPS53-215ENST00000573028 SCN9AQ15858 1988 aa18.2■□□□□ 0.5
VPS53-215ENST00000573028 RASA4BC9J798 803 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 RASA4O43374 803 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 GRIN3BO60391 1043 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 IVDP26440 423 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 C12orf56Q8IXR9 622 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 MCOLN2Q8IZK6 566 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 IWS1Q96ST2 819 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 TRAIPQ9BWF2 469 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 C1orf112Q9NSG2 853 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 ARL2BPQ9Y2Y0 163 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 UBR3Q6ZT12 1888 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 MROH7Q68CQ1 1323 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 CFHP08603 1231 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 TNNI1P19237 187 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 COPS2P61201 443 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 RHBDF2Q6PJF5 856 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 TMEM161BQ8NDZ6 487 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 ATL2Q8NHH9 583 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 CKAP2Q8WWK9 683 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 BSNDQ8WZ55 320 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 ZNF341Q9BYN7 854 aa18.19■□□□□ 0.5
VPS53-215ENST00000573028 KLHL14Q9P2G3 628 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms