RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 RNF26Q9BY78 433 aaPredicted RBP17.93■□□□□ 0.46
CLK3-223ENST00000568488 AVENQ9NQS1 362 aaPredicted RBP17.93■□□□□ 0.46
CLK3-223ENST00000568488 XPNPEP1Q9NQW7 623 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 SNTG2Q9NY99 539 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 VAV3Q9UKW4 847 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 PCDHA4Q9UN74 947 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 A0A1B0GUA9 196 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 K7ESF4 209 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 PRRG1O14668 218 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 ZNF197O14709 1029 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 SLC37A4O43826 429 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 MARCH6O60337 910 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 VIPR2P41587 438 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 CYP4A11Q02928 519 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 POU5F1BQ06416 359 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 SPIRE1Q08AE8 756 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 PTGDRQ13258 359 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 CTTNQ14247 550 aaKnown RBP17.92■□□□□ 0.46
CLK3-223ENST00000568488 LRRC32Q14392 662 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 EPHA7Q15375 998 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 UNQ6494/PRO21346Q6UXR6 183 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 CSGALNACT1Q8TDX6 532 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 BRF1Q92994 677 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 DYDC2Q96IM9 177 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 ASB16Q96NS5 453 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 TRPV5Q9NQA5 729 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 SH3GLB2Q9NR46 395 aa17.92■□□□□ 0.46
CLK3-223ENST00000568488 ZMYM2Q9UBW7 1377 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 PTGESO14684 152 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 ZNF806P0C7X5 589 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 FGFR3P22607 806 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 ARPP19P56211 112 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 KRT32Q14532 448 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 INF2Q27J81 1249 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 PRSS36Q5K4E3 855 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 CYP4A22Q5TCH4 519 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 NCAPH2Q6IBW4 605 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 PSAPL1Q6NUJ1 521 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 MOXD1Q6UVY6 613 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 PDZD4Q76G19 769 aaPredicted RBP17.91■□□□□ 0.46
CLK3-223ENST00000568488 TPH2Q8IWU9 490 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 BLIDQ8IZY5 108 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 SMARCD2Q92925 531 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 ZSWIM3Q96MP5 696 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 CXCL16Q9H2A7 254 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 ZSWIM4Q9H7M6 989 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 CEP295Q9C0D2 2601 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 ASPMQ8IZT6 3477 aa17.91■□□□□ 0.46
CLK3-223ENST00000568488 WDR27A2RRH5 827 aa17.9■□□□□ 0.46
CLK3-223ENST00000568488 B3GAT3O94766 335 aa17.9■□□□□ 0.46
CLK3-223ENST00000568488 HMGB1P09429 215 aaKnown RBP17.9■□□□□ 0.46
CLK3-223ENST00000568488 IGFBP6P24592 240 aaPredicted RBP17.9■□□□□ 0.46
CLK3-223ENST00000568488 TKTP29401 623 aaKnown RBP17.9■□□□□ 0.46
CLK3-223ENST00000568488 HOXC13P31276 330 aa17.9■□□□□ 0.46
CLK3-223ENST00000568488 CCR2P41597 374 aa17.9■□□□□ 0.46
CLK3-223ENST00000568488 KPNA1P52294 538 aaPredicted RBP17.9■□□□□ 0.46
CLK3-223ENST00000568488 NTRK3Q16288 839 aa17.9■□□□□ 0.46
CLK3-223ENST00000568488 TMEM132AQ24JP5 1023 aa17.9■□□□□ 0.46
CLK3-223ENST00000568488 Q6ZS52 159 aa17.9■□□□□ 0.46
CLK3-223ENST00000568488 YAF2Q8IY57 180 aa17.9■□□□□ 0.46
CLK3-223ENST00000568488 DEPDC1BQ8WUY9 529 aa17.9■□□□□ 0.46
CLK3-223ENST00000568488 FAM20AQ96MK3 541 aa17.9■□□□□ 0.46
CLK3-223ENST00000568488 LSM14BQ9BX40 385 aaKnown RBP17.9■□□□□ 0.46
CLK3-223ENST00000568488 CYP4F11Q9HBI6 524 aa17.9■□□□□ 0.46
CLK3-223ENST00000568488 BACE2Q9Y5Z0 518 aa17.9■□□□□ 0.46
CLK3-223ENST00000568488 ARHGEF37A1IGU5 675 aa17.89■□□□□ 0.45
CLK3-223ENST00000568488 SLC38A8A6NNN8 435 aa17.89■□□□□ 0.45
CLK3-223ENST00000568488 I3L4J1 428 aa17.89■□□□□ 0.45
CLK3-223ENST00000568488 RECQL4O94761 1208 aa17.89■□□□□ 0.45
CLK3-223ENST00000568488 GLRA2P23416 452 aa17.89■□□□□ 0.45
CLK3-223ENST00000568488 ARL2P36404 184 aa17.89■□□□□ 0.45
CLK3-223ENST00000568488 CCT2P78371 535 aaKnown RBP17.89■□□□□ 0.45
CLK3-223ENST00000568488 ANKS3Q6ZW76 656 aa17.89■□□□□ 0.45
CLK3-223ENST00000568488 WDR5BQ86VZ2 330 aa17.89■□□□□ 0.45
CLK3-223ENST00000568488 ZNF461Q8TAF7 563 aa17.89■□□□□ 0.45
CLK3-223ENST00000568488 DDX27Q96GQ7 796 aaKnown RBP17.89■□□□□ 0.45
CLK3-223ENST00000568488 SMOC1Q9H4F8 434 aa17.89■□□□□ 0.45
CLK3-223ENST00000568488 C2orf42Q9NWW7 574 aa17.89■□□□□ 0.45
CLK3-223ENST00000568488 TICRRQ7Z2Z1 1910 aa17.89■□□□□ 0.45
CLK3-223ENST00000568488 SDK1Q7Z5N4 2213 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 LRRIQ4A6NIV6 560 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 PAPSS2O95340 614 aaPredicted RBP17.88■□□□□ 0.45
CLK3-223ENST00000568488 MYL4P12829 197 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 IFNAR1P17181 557 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 GJA1P17302 382 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 SOX9P48436 509 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 ROR1Q01973 937 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 FOXC1Q12948 553 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 NAB2Q15742 525 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 TSGA10IPQ3SY00 556 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 IQCEQ6IPM2 695 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 NOSTRINQ8IVI9 506 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 MFSD6LQ8IWD5 586 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 HS6ST3Q8IZP7 471 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 TTC8Q8TAM2 541 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 ZSCAN18Q8TBC5 510 aaPredicted RBP17.88■□□□□ 0.45
CLK3-223ENST00000568488 FAM200AQ8TCP9 573 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 CCDC43Q96MW1 224 aaKnown RBP17.88■□□□□ 0.45
CLK3-223ENST00000568488 NFKBIZQ9BYH8 718 aa17.88■□□□□ 0.45
CLK3-223ENST00000568488 NCOA5Q9HCD5 579 aaKnown RBP17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms