RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 DNAJB4Q9UDY4 337 aa13.22□□□□□ -0.29
SF3B3-208ENST00000567250 PUF60Q9UHX1 559 aaKnown RBP13.22□□□□□ -0.29
SF3B3-208ENST00000567250 DACH1Q9UI36 760 aa13.22□□□□□ -0.29
SF3B3-208ENST00000567250 FAN1Q9Y2M0 1017 aa13.22□□□□□ -0.29
SF3B3-208ENST00000567250 C2CD2Q9Y426 696 aa13.22□□□□□ -0.29
SF3B3-208ENST00000567250 BIN1O00499 593 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 FGF18O76093 207 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 DDHD2O94830 711 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 ADRB2P07550 413 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 GALTP07902 379 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 NR2F2P24468 414 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 SLC11A1P49279 550 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 PLCB3Q01970 1234 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 BMS1Q14692 1282 aaKnown RBP13.21□□□□□ -0.29
SF3B3-208ENST00000567250 GRIN2CQ14957 1233 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 TMEM132DQ14C87 1099 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 CCDC183Q5T5S1 534 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 ADSSL1Q8N142 457 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 KLHL23Q8NBE8 558 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 BEST2Q8NFU1 509 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 GDPD5Q8WTR4 605 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 DDX27Q96GQ7 796 aaKnown RBP13.21□□□□□ -0.29
SF3B3-208ENST00000567250 DHTKD1Q96HY7 919 aaPredicted RBP13.21□□□□□ -0.29
SF3B3-208ENST00000567250 FBXL18Q96ME1 805 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 COLEC11Q9BWP8 271 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 PRDM12Q9H4Q4 367 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 MIOSQ9NXC5 875 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 PLAGL2Q9UPG8 496 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 LZTS1Q9Y250 596 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 FRMD4BQ9Y2L6 1034 aa13.21□□□□□ -0.29
SF3B3-208ENST00000567250 SF3B1O75533 1304 aaKnown RBP eCLIP13.2□□□□□ -0.3
SF3B3-208ENST00000567250 GOLGA8IPA6NC78 632 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 CASTOR2A6NHX0 329 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 GOLGA8JA6NMD2 632 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 LACTBL1A8MY62 500 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 NRP1O14786 923 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 TMEM191BP0C7N4 346 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 CYP3A5P20815 502 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 CCNE1P24864 410 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 PBX3P40426 434 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 ELAVL2Q12926 359 aaKnown RBP13.2□□□□□ -0.3
SF3B3-208ENST00000567250 NAB2Q15742 525 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 ZCWPW2Q504Y3 356 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 TIGD5Q53EQ6 642 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 ISM2Q6H9L7 571 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 JADE1Q6IE81 842 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 FOXR2Q6PJQ5 311 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 CRELD2Q6UXH1 353 aaPredicted RBP13.2□□□□□ -0.3
SF3B3-208ENST00000567250 Q7L0L9 218 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 SPRED2Q7Z698 418 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 MLKLQ8NB16 471 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 CACTINQ8WUQ7 758 aaKnown RBP13.2□□□□□ -0.3
SF3B3-208ENST00000567250 IGSF21Q96ID5 467 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 FNBP1Q96RU3 617 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 LMCD1Q9NZU5 365 aa13.2□□□□□ -0.3
SF3B3-208ENST00000567250 PRG3Q9Y2Y8 225 aaPredicted RBP13.2□□□□□ -0.3
SF3B3-208ENST00000567250 TMEM189-UBE2V1I3L0A0 370 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 MAPK13O15264 365 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 ITGB1P05556 798 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 NFICP08651 508 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 RPL9P32969 192 aaKnown RBP13.19□□□□□ -0.3
SF3B3-208ENST00000567250 FKBP3Q00688 224 aaKnown RBP13.19□□□□□ -0.3
SF3B3-208ENST00000567250 PAK1Q13153 545 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 KLHL40Q2TBA0 621 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 CEP135Q66GS9 1140 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 CENPPQ6IPU0 288 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 KLHL10Q6JEL2 608 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 PDE12Q6L8Q7 609 aaKnown RBP13.19□□□□□ -0.3
SF3B3-208ENST00000567250 RBM43Q6ZSC3 357 aaKnown RBP13.19□□□□□ -0.3
SF3B3-208ENST00000567250 CBWD2Q8IUF1 395 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 POF1BQ8WVV4 589 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 PPP2R3CQ969Q6 453 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 ANKRD36BP1Q96IX9 119 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 ZMAT2Q96NC0 199 aaKnown RBP13.19□□□□□ -0.3
SF3B3-208ENST00000567250 MKNK1Q9BUB5 465 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 TLR9Q9NR96 1032 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 ADAM28Q9UKQ2 775 aa13.19□□□□□ -0.3
SF3B3-208ENST00000567250 R3HCC1Q9Y3T6 440 aaKnown RBP13.19□□□□□ -0.3
SF3B3-208ENST00000567250 TSC2P49815 1807 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 EPOPA6NHQ4 379 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 NT5C1B-RDH14C9J2C7 533 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 TULP1O00294 542 aaPredicted RBP13.18□□□□□ -0.3
SF3B3-208ENST00000567250 PODXLO00592 558 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 CETN3O15182 167 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 SLC16A3O15427 465 aaKnown RBP13.18□□□□□ -0.3
SF3B3-208ENST00000567250 MEFVO15553 781 aaPredicted RBP13.18□□□□□ -0.3
SF3B3-208ENST00000567250 TRAPPC3O43617 180 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 B4GALT3O60512 393 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 LPXNO60711 386 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 TADA2AO75478 443 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 TNNC2P02585 160 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 EPB41P11171 864 aaKnown RBP13.18□□□□□ -0.3
SF3B3-208ENST00000567250 KRT13P13646 458 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 FOSL2P15408 326 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 PAX3P23760 479 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 LRPAP1P30533 357 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 PSMC2P35998 433 aaKnown RBP13.18□□□□□ -0.3
SF3B3-208ENST00000567250 CLCNKBP51801 687 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 CYP24A1Q07973 514 aa13.18□□□□□ -0.3
SF3B3-208ENST00000567250 ADAM9Q13443 819 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms