RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NR1I2O75469 434 aa18.83■□□□□ 0.6
CLN3-217ENST00000565354 OFD1O75665 1012 aa18.83■□□□□ 0.6
CLN3-217ENST00000565354 RPN1P04843 607 aaKnown RBP18.83■□□□□ 0.6
CLN3-217ENST00000565354 PRR29P0C7W0 189 aa18.83■□□□□ 0.6
CLN3-217ENST00000565354 YARSP54577 528 aaKnown RBP18.83■□□□□ 0.6
CLN3-217ENST00000565354 POSTNQ15063 836 aa18.83■□□□□ 0.6
CLN3-217ENST00000565354 SYCE2Q6PIF2 218 aa18.83■□□□□ 0.6
CLN3-217ENST00000565354 ENGASEQ8NFI3 743 aa18.83■□□□□ 0.6
CLN3-217ENST00000565354 ZBTB45Q96K62 511 aaPredicted RBP18.83■□□□□ 0.6
CLN3-217ENST00000565354 FAM193BQ96PV7 902 aaPredicted RBP18.83■□□□□ 0.6
CLN3-217ENST00000565354 RNF39Q9H2S5 420 aa18.83■□□□□ 0.6
CLN3-217ENST00000565354 TMEM206Q9H813 350 aa18.83■□□□□ 0.6
CLN3-217ENST00000565354 TYW1Q9NV66 732 aaKnown RBP18.83■□□□□ 0.6
CLN3-217ENST00000565354 HCSTQ9UBK5 93 aa18.83■□□□□ 0.6
CLN3-217ENST00000565354 LZTS1Q9Y250 596 aa18.83■□□□□ 0.6
CLN3-217ENST00000565354 GVINP1Q7Z2Y8 2422 aa18.83■□□□□ 0.6
CLN3-217ENST00000565354 PRPF6O94906 941 aaKnown RBP18.82■□□□□ 0.6
CLN3-217ENST00000565354 PIGRP01833 764 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 MLH1P40692 756 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 CASP5P51878 434 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 OSTNP61366 133 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 PSMD2Q13200 908 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 SNW1Q13573 536 aaKnown RBP18.82■□□□□ 0.6
CLN3-217ENST00000565354 KMT5BQ4FZB7 885 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 PLPP4Q5VZY2 271 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 SLFN12LQ6IEE8 588 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 KREMEN2Q8NCW0 462 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 TIGD1Q96MW7 591 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 GAD1Q99259 594 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 GBP3Q9H0R5 595 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 PTPRHQ9HD43 1115 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 SLC39A2Q9NP94 309 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 KLK14Q9P0G3 267 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 KANSL3Q9P2N6 904 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 NR2E1Q9Y466 385 aa18.82■□□□□ 0.6
CLN3-217ENST00000565354 EIF3DO15371 548 aaKnown RBP eCLIP18.81■□□□□ 0.6
CLN3-217ENST00000565354 PPP1R37O75864 691 aa18.81■□□□□ 0.6
CLN3-217ENST00000565354 RECQL4O94761 1208 aa18.81■□□□□ 0.6
CLN3-217ENST00000565354 POMCP01189 267 aa18.81■□□□□ 0.6
CLN3-217ENST00000565354 HOXB8P17481 243 aaPredicted RBP18.81■□□□□ 0.6
CLN3-217ENST00000565354 LAG3P18627 525 aa18.81■□□□□ 0.6
CLN3-217ENST00000565354 PROZP22891 400 aa18.81■□□□□ 0.6
CLN3-217ENST00000565354 SP100P23497 879 aaPredicted RBP18.81■□□□□ 0.6
CLN3-217ENST00000565354 GRM5P41594 1212 aa18.81■□□□□ 0.6
CLN3-217ENST00000565354 CLEC17AQ6ZS10 378 aa18.81■□□□□ 0.6
CLN3-217ENST00000565354 ASCL5Q7RTU5 278 aa18.81■□□□□ 0.6
CLN3-217ENST00000565354 UBALD2Q8IYN6 164 aa18.81■□□□□ 0.6
CLN3-217ENST00000565354 ACAP3Q96P50 834 aa18.81■□□□□ 0.6
CLN3-217ENST00000565354 APOL5Q9BWW9 433 aa18.81■□□□□ 0.6
CLN3-217ENST00000565354 FGFBP2Q9BYJ0 223 aa18.81■□□□□ 0.6
CLN3-217ENST00000565354 TOPORSQ9NS56 1045 aaPredicted RBP18.81■□□□□ 0.6
CLN3-217ENST00000565354 DCHS1Q96JQ0 3298 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 UBE4BO95155 1302 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 ARL5CA6NH57 179 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 KLRC4O43908 158 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 SMC2O95347 1197 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 SCNN1GP51170 649 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 PLCB3Q01970 1234 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 MCL1Q07820 350 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 DPYDQ12882 1025 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 PNOCQ13519 176 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 LLGL2Q6P1M3 1020 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 CEP120Q8N960 986 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 POMGNT1Q8WZA1 660 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 TCF25Q9BQ70 676 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 MSTO1Q9BUK6 570 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 STRA6Q9BX79 667 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 CWH43Q9H720 699 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 NGRNQ9NPE2 291 aaKnown RBP18.8■□□□□ 0.6
CLN3-217ENST00000565354 ENTPD7Q9NQZ7 604 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 TBC1D13Q9NVG8 400 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 PUF60Q9UHX1 559 aaKnown RBP18.8■□□□□ 0.6
CLN3-217ENST00000565354 SORCS3Q9UPU3 1222 aa18.8■□□□□ 0.6
CLN3-217ENST00000565354 PRR23AA6NEV1 266 aa18.79■□□□□ 0.6
CLN3-217ENST00000565354 ZC3H11AO75152 810 aaKnown RBP eCLIP18.79■□□□□ 0.6
CLN3-217ENST00000565354 NBL1P41271 181 aa18.79■□□□□ 0.6
CLN3-217ENST00000565354 KCNA1Q09470 495 aa18.79■□□□□ 0.6
CLN3-217ENST00000565354 MTMR3Q13615 1198 aa18.79■□□□□ 0.6
CLN3-217ENST00000565354 KYAT1Q16773 422 aa18.79■□□□□ 0.6
CLN3-217ENST00000565354 NELFCDQ8IXH7 590 aa18.79■□□□□ 0.6
CLN3-217ENST00000565354 ZFP42Q96MM3 310 aa18.79■□□□□ 0.6
CLN3-217ENST00000565354 ZNF558Q96NG5 402 aa18.79■□□□□ 0.6
CLN3-217ENST00000565354 RMND1Q9NWS8 449 aa18.79■□□□□ 0.6
CLN3-217ENST00000565354 ZMYM2Q9UBW7 1377 aa18.79■□□□□ 0.6
CLN3-217ENST00000565354 CARNS1A5YM72 827 aa18.78■□□□□ 0.6
CLN3-217ENST00000565354 HIDE1A8MVS5 230 aa18.78■□□□□ 0.6
CLN3-217ENST00000565354 ANKRD63C9JTQ0 380 aa18.78■□□□□ 0.6
CLN3-217ENST00000565354 TULP1O00294 542 aaPredicted RBP18.78■□□□□ 0.6
CLN3-217ENST00000565354 ABLIM1O14639 778 aa18.78■□□□□ 0.6
CLN3-217ENST00000565354 OGTO15294 1046 aa18.78■□□□□ 0.6
CLN3-217ENST00000565354 KIF20AO95235 890 aa18.78■□□□□ 0.6
CLN3-217ENST00000565354 EHHADHQ08426 723 aa18.78■□□□□ 0.6
CLN3-217ENST00000565354 ARMCX5Q6P1M9 558 aa18.78■□□□□ 0.6
CLN3-217ENST00000565354 LRRC55Q6ZSA7 311 aa18.78■□□□□ 0.6
CLN3-217ENST00000565354 TMEM105Q8N8V8 129 aa18.78■□□□□ 0.6
CLN3-217ENST00000565354 GLIS3Q8NEA6 775 aa18.78■□□□□ 0.6
CLN3-217ENST00000565354 NOC3LQ8WTT2 800 aaKnown RBP18.78■□□□□ 0.6
CLN3-217ENST00000565354 SMARCE1Q969G3 411 aa18.78■□□□□ 0.6
CLN3-217ENST00000565354 AGO2Q9UKV8 859 aaKnown RBP18.78■□□□□ 0.6
CLN3-217ENST00000565354 CACNA1AO00555 2505 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms