RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 UVRAGQ9P2Y5 699 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 RGS17Q9UGC6 210 aaPredicted RBP14.09□□□□□ -0.15
CLN3-210ENST00000563874 ARL2BPQ9Y2Y0 163 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 BNIP1Q12981 228 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 MYBPC2Q14324 1141 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 NAALADL1Q9UQQ1 740 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 GSTTP1A0A1W2PQM5 241 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 DIAPH2O60879 1101 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 SKAP2O75563 359 aaPredicted RBP14.08□□□□□ -0.16
CLN3-210ENST00000563874 PAX7P23759 505 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 RRM1P23921 792 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 SPP2Q13103 211 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 RIPK1Q13546 671 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 FAM102BQ5T8I3 360 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 PLA2G4FQ68DD2 849 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 LDHDQ86WU2 507 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 RSRC1Q96IZ7 334 aaKnown RBP14.08□□□□□ -0.16
CLN3-210ENST00000563874 AGBL1Q96MI9 1066 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 MXRA8Q9BRK3 442 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 EBF2Q9HAK2 575 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 CEP83Q9Y592 693 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 GRIN3BO60391 1043 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 P4HBP07237 508 aaKnown RBP14.08□□□□□ -0.16
CLN3-210ENST00000563874 SOX10P56693 466 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 UGCGQ16739 394 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 KRT39Q6A163 491 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 ACAD10Q6JQN1 1059 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 CRELD2Q6UXH1 353 aaPredicted RBP14.08□□□□□ -0.16
CLN3-210ENST00000563874 ERICH1Q86X53 443 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 DDX1Q92499 740 aaKnown RBP14.08□□□□□ -0.16
CLN3-210ENST00000563874 PLVAPQ9BX97 442 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 COL20A1Q9P218 1284 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 C15orf41Q9Y2V0 281 aa14.08□□□□□ -0.16
CLN3-210ENST00000563874 MRPL11Q9Y3B7 192 aaKnown RBP14.08□□□□□ -0.16
CLN3-210ENST00000563874 CLRN2A0PK11 232 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 ECE2O60344 883 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 SPAG7O75391 227 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 GAS8O95995 478 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 RALAP11233 206 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 SSR1P43307 286 aaKnown RBP14.07□□□□□ -0.16
CLN3-210ENST00000563874 TMED2Q15363 201 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 CAPN12Q6ZSI9 719 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 CEP120Q8N960 986 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 SPOCK2Q92563 424 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 MRRFQ96E11 262 aaKnown RBP14.07□□□□□ -0.16
CLN3-210ENST00000563874 NT5C1BQ96P26 610 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 DCLK3Q9C098 648 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 ARHGEF10LQ9HCE6 1279 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 QSER1Q2KHR3 1735 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 A0A1B0GUA9 196 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 NPR1P16066 1061 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 MUTP22033 750 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 ATP5DP30049 168 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 YWHABP31946 246 aaKnown RBP14.07□□□□□ -0.16
CLN3-210ENST00000563874 FOXN2P32314 431 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 LMBRD2Q68DH5 695 aaPredicted RBP14.07□□□□□ -0.16
CLN3-210ENST00000563874 ANKLE1Q8NAG6 615 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 PARD3BQ8TEW8 1205 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 VTI1AQ96AJ9 217 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 L3MBTL3Q96JM7 780 aaPredicted RBP14.07□□□□□ -0.16
CLN3-210ENST00000563874 GLIS2Q9BZE0 524 aaPredicted RBP14.07□□□□□ -0.16
CLN3-210ENST00000563874 EHMT1Q9H9B1 1298 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 NKIRAS1Q9NYS0 192 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 MROH7Q68CQ1 1323 aa14.07□□□□□ -0.16
CLN3-210ENST00000563874 GJB6O95452 261 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 MSH2P43246 934 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 GTF2BQ00403 316 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 PTK6Q13882 451 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 STRIP1Q5VSL9 837 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 ECHDC2Q86YB7 292 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 RIT2Q99578 217 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 TRAIPQ9BWF2 469 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 RXFP1Q9HBX9 757 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 HOMER2Q9NSB8 354 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 KLHL11Q9NVR0 708 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 RAB20Q9NX57 234 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 KLHL14Q9P2G3 628 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 USTQ9Y2C2 406 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 EIF4E1BA6NMX2 242 aaKnown RBP14.06□□□□□ -0.16
CLN3-210ENST00000563874 RASA4BC9J798 803 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 NFIBO00712 420 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 RASA4O43374 803 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 CNGA1P29973 690 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 CLEC16AQ2KHT3 1053 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 TMEM63BQ5T3F8 832 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 PASD1Q8IV76 773 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 FBXL13Q8NEE6 735 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 SLCO2A1Q92959 643 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 RANBP17Q9H2T7 1088 aaKnown RBP14.06□□□□□ -0.16
CLN3-210ENST00000563874 ETNK1Q9HBU6 452 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 DHX15O43143 795 aaKnown RBP14.06□□□□□ -0.16
CLN3-210ENST00000563874 QARSP47897 775 aaKnown RBP14.06□□□□□ -0.16
CLN3-210ENST00000563874 ZNF365Q70YC5 407 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 CDAN1Q8IWY9 1227 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 C12orf56Q8IXR9 622 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 KCNV2Q8TDN2 545 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 KIFAP3Q92845 792 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 PITPNM3Q9BZ71 974 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 KIF9Q9HAQ2 790 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 ARHGEF3Q9NR81 526 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms