RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 GPD1LQ8N335 351 aa10.65□□□□□ -0.7
CLK3-208ENST00000562626 DEFB123Q8N688 67 aa10.65□□□□□ -0.7
CLK3-208ENST00000562626 C3orf58Q8NDZ4 430 aa10.65□□□□□ -0.7
CLK3-208ENST00000562626 URGCPQ8TCY9 931 aa10.65□□□□□ -0.7
CLK3-208ENST00000562626 P2RX5Q93086 422 aa10.65□□□□□ -0.7
CLK3-208ENST00000562626 FAM212AQ96EL1 285 aa10.65□□□□□ -0.7
CLK3-208ENST00000562626 GUCD1Q96NT3 240 aa10.65□□□□□ -0.7
CLK3-208ENST00000562626 PRDM12Q9H4Q4 367 aa10.65□□□□□ -0.7
CLK3-208ENST00000562626 RPF1Q9H9Y2 349 aaKnown RBP10.65□□□□□ -0.7
CLK3-208ENST00000562626 SLC28A3Q9HAS3 691 aa10.65□□□□□ -0.7
CLK3-208ENST00000562626 PDE11AQ9HCR9 933 aa10.65□□□□□ -0.7
CLK3-208ENST00000562626 ALG13Q9NP73 1137 aaKnown RBP10.65□□□□□ -0.7
CLK3-208ENST00000562626 TOPORSQ9NS56 1045 aaPredicted RBP10.65□□□□□ -0.7
CLK3-208ENST00000562626 TRAF3IP3Q9Y228 551 aa10.65□□□□□ -0.7
CLK3-208ENST00000562626 PRG3Q9Y2Y8 225 aaPredicted RBP10.65□□□□□ -0.7
CLK3-208ENST00000562626 PCDHGC5Q9Y5F6 944 aa10.65□□□□□ -0.7
CLK3-208ENST00000562626 BRWD1Q9NSI6 2320 aa10.65□□□□□ -0.7
CLK3-208ENST00000562626 GRM6O15303 877 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 AKAP3O75969 853 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 CSPG5O95196 566 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 EFEMP2O95967 443 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 CCNE1P24864 410 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 CLCNKBP51801 687 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 NLRP12P59046 1061 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 DLG4P78352 724 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 CYP24A1Q07973 514 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 ADGRE1Q14246 886 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 SNRNP35Q16560 246 aaKnown RBP10.64□□□□□ -0.71
CLK3-208ENST00000562626 KLHL40Q2TBA0 621 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 C1orf220Q5T0J3 134 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 CCDC183Q5T5S1 534 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 TTI2Q6NXR4 508 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 KCNT2Q6UVM3 1135 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 C11orf57Q6ZUT1 292 aaPredicted RBP10.64□□□□□ -0.71
CLK3-208ENST00000562626 HS2ST1Q7LGA3 356 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 APBB1IPQ7Z5R6 666 aaPredicted RBP10.64□□□□□ -0.71
CLK3-208ENST00000562626 ZC3H3Q8IXZ2 948 aaKnown RBP10.64□□□□□ -0.71
CLK3-208ENST00000562626 HACE1Q8IYU2 909 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 SLC39A11Q8N1S5 342 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 TRIML1Q8N9V2 468 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 KLHL23Q8NBE8 558 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 XXYLT1Q8NBI6 393 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 HASPINQ8TF76 798 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 NELFBQ8WX92 580 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 TGS1Q96RS0 853 aaKnown RBP10.64□□□□□ -0.71
CLK3-208ENST00000562626 RPS6KC1Q96S38 1066 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 POP1Q99575 1024 aaKnown RBP10.64□□□□□ -0.71
CLK3-208ENST00000562626 MRPL9Q9BYD2 267 aaKnown RBP10.64□□□□□ -0.71
CLK3-208ENST00000562626 UBN1Q9NPG3 1134 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 RBAKQ9NYW8 714 aaPredicted RBP10.64□□□□□ -0.71
CLK3-208ENST00000562626 EYSQ5T1H1 3165 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 GREB1Q4ZG55 1949 aa10.64□□□□□ -0.71
CLK3-208ENST00000562626 C5orf67F2Z3F1 127 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 NRP1O14786 923 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 KIF4AO95239 1232 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 THP07101 528 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 NR2F2P24468 414 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 YARSP54577 528 aaKnown RBP10.63□□□□□ -0.71
CLK3-208ENST00000562626 RNASELQ05823 741 aaKnown RBP10.63□□□□□ -0.71
CLK3-208ENST00000562626 PPP2R3AQ06190 1150 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 TUSC3Q13454 348 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 NFIL3Q16649 462 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 SPOUT1Q5T280 376 aaKnown RBP10.63□□□□□ -0.71
CLK3-208ENST00000562626 ZNF697Q5TEC3 545 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 TAS1R1Q7RTX1 841 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 SLC9A9Q8IVB4 645 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 FBXO22Q8NEZ5 403 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 OR5B17Q8NGF7 314 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 CXorf38Q8TB03 319 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 SPPL3Q8TCT6 385 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 TMEM174Q8WUU8 243 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 ZNF516Q92618 1163 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 KIF12Q96FN5 646 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 B3GALT6Q96L58 329 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 MFSD14AQ96MC6 490 aa10.63□□□□□ -0.71
CLK3-208ENST00000562626 RNF216Q9NWF9 866 aaPredicted RBP10.63□□□□□ -0.71
CLK3-208ENST00000562626 DENND4CQ5VZ89 1909 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 OBSL1O75147 1896 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 H3BNC9 293 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 I3L4J1 428 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 TULP1O00294 542 aaPredicted RBP10.62□□□□□ -0.71
CLK3-208ENST00000562626 CALUO43852 315 aaPredicted RBP10.62□□□□□ -0.71
CLK3-208ENST00000562626 EXOC3O60645 756 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 FGF18O76093 207 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 LAG3P18627 525 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 IRS1P35568 1242 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 OR1G1P47890 313 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 ERVFC1P60507 584 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 SNRPFP62306 86 aaKnown RBP10.62□□□□□ -0.71
CLK3-208ENST00000562626 GPM6BQ13491 265 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 UPP1Q16831 310 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 EDRF1Q3B7T1 1238 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 CEP135Q66GS9 1140 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 RNF168Q8IYW5 571 aaPredicted RBP10.62□□□□□ -0.71
CLK3-208ENST00000562626 MYLIPQ8WY64 445 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 ELMO3Q96BJ8 720 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 CCDC127Q96BQ5 260 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 BORCS6Q96GS4 357 aa10.62□□□□□ -0.71
CLK3-208ENST00000562626 DHTKD1Q96HY7 919 aaPredicted RBP10.62□□□□□ -0.71
CLK3-208ENST00000562626 IGSF21Q96ID5 467 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms