RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 ARHGEF3Q9NR81 526 aa18.35■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 SH2B1Q9NRF2 756 aaPredicted RBP18.35■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 HCFC1R1Q9NWW0 138 aa18.35■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 CDH7Q9ULB5 785 aa18.35■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 POLIQ9UNA4 740 aa18.35■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 CDY1Q9Y6F8 540 aa18.35■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 TRIP11Q15643 1979 aa18.35■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 MYH15Q9Y2K3 1946 aa18.35■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 SMIM28A0A1B0GU29 152 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 CCDC169A6NNP5 214 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 I3L4J1 428 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 HIP1RO75146 1068 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 GRM5P41594 1212 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 MAPK7Q13164 816 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 XKR4Q5GH76 650 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 PHLDB3Q6NSJ2 640 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 ALKAL1Q6UXT8 129 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 ITFG1Q8TB96 612 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 DDX27Q96GQ7 796 aaKnown RBP18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 UROC1Q96N76 676 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 RUSC1Q9BVN2 902 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 DLGAP2Q9P1A6 1054 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 ARHGAP28Q9P2N2 729 aa18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 DAXXQ9UER7 740 aaPredicted RBP18.34■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 NOTCH4Q99466 2003 aa18.33■□□□□ 0.53
VPS9D1-AS1-201ENST00000562298 XYLBO75191 536 aa18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 DCNP07585 359 aaKnown RBP18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 POU2F2P09086 479 aa18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 RFX1P22670 979 aa18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 CDC25AP30304 524 aa18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 BRCC3P46736 316 aa18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 OSTNP61366 133 aa18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 SPECC1Q5M775 1068 aa18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 KCNK18Q7Z418 384 aa18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 ZMAT2Q96NC0 199 aaKnown RBP18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 MMTAG2Q9BU76 263 aaKnown RBP18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 RAB34Q9BZG1 259 aa18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 TMEM134Q9H6X4 195 aa18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 DNMT3BQ9UBC3 853 aaKnown RBP18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 BACE2Q9Y5Z0 518 aa18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 STK24Q9Y6E0 443 aa18.33■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 ABLIM1O14639 778 aa18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 MEFVO15553 781 aaPredicted RBP18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 GPC5P78333 572 aa18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 DMP1Q13316 513 aaPredicted RBP18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 UVSSAQ2YD98 709 aa18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 ZNF568Q3ZCX4 644 aa18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 RINT1Q6NUQ1 792 aa18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 APBB1IPQ7Z5R6 666 aaPredicted RBP18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 CCDC94Q9BW85 323 aaPredicted RBP18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 TARS2Q9BW92 718 aaKnown RBP18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 MRPL4Q9BYD3 311 aaKnown RBP18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 KMT5AQ9NQR1 393 aa18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 TOPORSQ9NS56 1045 aaPredicted RBP18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 DNM3Q9UQ16 869 aa18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 SIT1Q9Y3P8 196 aa18.32■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 TRAPPC3O43617 180 aa18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 GLULP15104 373 aa18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 PROZP22891 400 aa18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 PRPHP41219 470 aa18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 YARSP54577 528 aaKnown RBP18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 PABPC1LQ4VXU2 614 aaKnown RBP18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 KRT79Q5XKE5 535 aa18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 ANKS3Q6ZW76 656 aa18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 C1orf186Q6ZWK4 172 aa18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 MTSS1LQ765P7 747 aa18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 NPAS3Q8IXF0 933 aa18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 SNX27Q96L92 541 aa18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 DRC1Q96MC2 740 aa18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 FOXQ1Q9C009 403 aa18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.31■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 SFI1A8K8P3 1242 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 LAD1O00515 517 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 PODXLO00592 558 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 SLC16A4O15374 487 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 LRRN2O75325 713 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 MCF2P10911 925 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 KCNE1P15382 129 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 STARD6P59095 220 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 ROR1Q01973 937 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 SLC5A9Q2M3M2 681 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 SLC8B1Q6J4K2 584 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 DTHD1Q6ZMT9 781 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 RTL10Q7L3V2 364 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 ADSSL1Q8N142 457 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 PJA1Q8NG27 643 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 KXD1Q9BQD3 176 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 SLC38A7Q9NVC3 462 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 CNTN3Q9P232 1028 aa18.3■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 ZNF292O60281 2723 aa18.29■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 TBC1D4O60343 1298 aa18.29■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 SNW1Q13573 536 aaKnown RBP18.29■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 C8orf34Q49A92 452 aa18.29■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 VARS2Q5ST30 1063 aaKnown RBP18.29■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 POTEHQ6S545 545 aa18.29■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 MPZL3Q6UWV2 235 aa18.29■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 ZNF461Q8TAF7 563 aa18.29■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 ING5Q8WYH8 240 aa18.29■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 C18orf25Q96B23 403 aaPredicted RBP18.29■□□□□ 0.52
VPS9D1-AS1-201ENST00000562298 ZBTB45Q96K62 511 aaPredicted RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms