RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 NARSO43776 548 aaKnown RBP17.78■□□□□ 0.44
SNX1-213ENST00000561026 MCF2P10911 925 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 NPR3P17342 541 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 HOXA9P31269 272 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 MCM2P49736 904 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 SOX4Q06945 474 aaPredicted RBP17.78■□□□□ 0.44
SNX1-213ENST00000561026 MPZL3Q6UWV2 235 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 C3orf58Q8NDZ4 430 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 FLCNQ8NFG4 579 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 SPIRE2Q8WWL2 714 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 ATOH1Q92858 354 aaPredicted RBP17.78■□□□□ 0.44
SNX1-213ENST00000561026 DDX27Q96GQ7 796 aaKnown RBP17.78■□□□□ 0.44
SNX1-213ENST00000561026 ACAP3Q96P50 834 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 UPF2Q9HAU5 1272 aaKnown RBP17.78■□□□□ 0.44
SNX1-213ENST00000561026 SLC38A7Q9NVC3 462 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 MTRRQ9UBK8 725 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 WNT16Q9UBV4 365 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 C8AP07357 584 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 PLS3P13797 630 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 KCNE1P15382 129 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 FSHRP23945 695 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 OR1D2P34982 312 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 SLC12A3P55017 1021 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 RAD51AP2Q09MP3 1159 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 PPM1LQ5SGD2 360 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 CWF19L1Q69YN2 538 aaKnown RBP17.77■□□□□ 0.43
SNX1-213ENST00000561026 GET4Q7L5D6 327 aaPredicted RBP17.77■□□□□ 0.43
SNX1-213ENST00000561026 GRASPQ7Z6J2 395 aaPredicted RBP17.77■□□□□ 0.43
SNX1-213ENST00000561026 SIX5Q8N196 739 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 TMEM161BQ8NDZ6 487 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 SNX27Q96L92 541 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 ZMAT2Q96NC0 199 aaKnown RBP17.77■□□□□ 0.43
SNX1-213ENST00000561026 PLIN2Q99541 437 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 FAM86C1Q9NVL1 165 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 KCND2Q9NZV8 630 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 BACE2Q9Y5Z0 518 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 ZFP37Q9Y6Q3 630 aaPredicted RBP17.77■□□□□ 0.43
SNX1-213ENST00000561026 DOCK8Q8NF50 2099 aa17.77■□□□□ 0.43
SNX1-213ENST00000561026 MYO15AQ9UKN7 3530 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 ZFHX2Q9C0A1 2572 aaPredicted RBP17.76■□□□□ 0.43
SNX1-213ENST00000561026 ANHXE9PGG2 379 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 I3L4J1 428 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 TOM1L1O75674 476 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 PLA2G4BP0C869 781 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 TKTP29401 623 aaKnown RBP17.76■□□□□ 0.43
SNX1-213ENST00000561026 BRCC3P46736 316 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 SMTNP53814 917 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 STRN3Q13033 797 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 UVSSAQ2YD98 709 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 AXDND1Q5T1B0 1012 aaPredicted RBP17.76■□□□□ 0.43
SNX1-213ENST00000561026 RSPO2Q6UXX9 243 aaPredicted RBP17.76■□□□□ 0.43
SNX1-213ENST00000561026 ANKS3Q6ZW76 656 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 CDK5RAP3Q96JB5 506 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 ZBTB45Q96K62 511 aaPredicted RBP17.76■□□□□ 0.43
SNX1-213ENST00000561026 CNTN3Q9P232 1028 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 SMC3Q9UQE7 1217 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 CDY1Q9Y6F8 540 aa17.76■□□□□ 0.43
SNX1-213ENST00000561026 VWA8A3KMH1 1905 aa17.75■□□□□ 0.43
SNX1-213ENST00000561026 CCL16O15467 120 aa17.75■□□□□ 0.43
SNX1-213ENST00000561026 MEFVO15553 781 aaPredicted RBP17.75■□□□□ 0.43
SNX1-213ENST00000561026 PI15O43692 258 aa17.75■□□□□ 0.43
SNX1-213ENST00000561026 XYLBO75191 536 aa17.75■□□□□ 0.43
SNX1-213ENST00000561026 CFHP08603 1231 aa17.75■□□□□ 0.43
SNX1-213ENST00000561026 MAPTP10636 758 aaKnown RBP17.75■□□□□ 0.43
SNX1-213ENST00000561026 SRFP11831 508 aa17.75■□□□□ 0.43
SNX1-213ENST00000561026 AOC1P19801 751 aa17.75■□□□□ 0.43
SNX1-213ENST00000561026 NTHL1P78549 312 aa17.75■□□□□ 0.43
SNX1-213ENST00000561026 TMEM119Q4V9L6 283 aa17.75■□□□□ 0.43
SNX1-213ENST00000561026 LARP1BQ659C4 914 aaKnown RBP17.75■□□□□ 0.43
SNX1-213ENST00000561026 RTL10Q7L3V2 364 aa17.75■□□□□ 0.43
SNX1-213ENST00000561026 SLC7A14Q8TBB6 771 aa17.75■□□□□ 0.43
SNX1-213ENST00000561026 TRIP11Q15643 1979 aa17.74■□□□□ 0.43
SNX1-213ENST00000561026 PODXLO00592 558 aa17.74■□□□□ 0.43
SNX1-213ENST00000561026 POU2F2P09086 479 aa17.74■□□□□ 0.43
SNX1-213ENST00000561026 HARSP12081 509 aaKnown RBP17.74■□□□□ 0.43
SNX1-213ENST00000561026 RPL9P32969 192 aaKnown RBP17.74■□□□□ 0.43
SNX1-213ENST00000561026 HTR4Q13639 388 aa17.74■□□□□ 0.43
SNX1-213ENST00000561026 ARSHQ5FYA8 562 aa17.74■□□□□ 0.43
SNX1-213ENST00000561026 ZPBP2Q6X784 338 aa17.74■□□□□ 0.43
SNX1-213ENST00000561026 AK8Q96MA6 479 aa17.74■□□□□ 0.43
SNX1-213ENST00000561026 ANKFY1Q9P2R3 1169 aa17.74■□□□□ 0.43
SNX1-213ENST00000561026 CDH7Q9ULB5 785 aa17.74■□□□□ 0.43
SNX1-213ENST00000561026 POLIQ9UNA4 740 aa17.74■□□□□ 0.43
SNX1-213ENST00000561026 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.74■□□□□ 0.43
SNX1-213ENST00000561026 DOCK6Q96HP0 2047 aa17.73■□□□□ 0.43
SNX1-213ENST00000561026 NPHP3-ACAD11A0A0J9YXS1 232 aa17.73■□□□□ 0.43
SNX1-213ENST00000561026 KRBA1A5PL33 1030 aa17.73■□□□□ 0.43
SNX1-213ENST00000561026 SLC26A4O43511 780 aa17.73■□□□□ 0.43
SNX1-213ENST00000561026 NOLC1Q14978 699 aaKnown RBP eCLIP17.73■□□□□ 0.43
SNX1-213ENST00000561026 SLC10A6Q3KNW5 377 aa17.73■□□□□ 0.43
SNX1-213ENST00000561026 SLC8B1Q6J4K2 584 aa17.73■□□□□ 0.43
SNX1-213ENST00000561026 FGF13Q92913 245 aa17.73■□□□□ 0.43
SNX1-213ENST00000561026 C18orf25Q96B23 403 aaPredicted RBP17.73■□□□□ 0.43
SNX1-213ENST00000561026 TBC1D32Q96NH3 1257 aa17.73■□□□□ 0.43
SNX1-213ENST00000561026 RTP3Q9BQQ7 232 aa17.73■□□□□ 0.43
SNX1-213ENST00000561026 LARSQ9P2J5 1176 aaKnown RBP17.73■□□□□ 0.43
SNX1-213ENST00000561026 NUMBLQ9Y6R0 609 aa17.73■□□□□ 0.43
SNX1-213ENST00000561026 VPS13AQ96RL7 3174 aa17.72■□□□□ 0.43
SNX1-213ENST00000561026 SYN3O14994 580 aa17.72■□□□□ 0.43
SNX1-213ENST00000561026 CLDN3O15551 220 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms