RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 RAB20Q9NX57 234 aa12.21□□□□□ -0.45
SNX1-212ENST00000560861 ARHGAP20Q9P2F6 1191 aa12.21□□□□□ -0.45
SNX1-212ENST00000560861 DNAJC12Q9UKB3 198 aa12.21□□□□□ -0.45
SNX1-212ENST00000560861 TANC1Q9C0D5 1861 aa12.21□□□□□ -0.46
SNX1-212ENST00000560861 KIAA0100Q14667 2235 aaKnown RBP12.21□□□□□ -0.46
SNX1-212ENST00000560861 LACTBL1A8MY62 500 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 F8VZ95 297 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 CD4P01730 458 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 CTSHP09668 335 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 TNNI1P19237 187 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 THPOP40225 353 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 PRKCIP41743 596 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 OSTNP61366 133 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 CETN1Q12798 172 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 DSC3Q14574 896 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 LPIN1Q14693 890 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 MBTPS1Q14703 1052 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 ASTE1Q2TB18 679 aaPredicted RBP12.2□□□□□ -0.46
SNX1-212ENST00000560861 XKR4Q5GH76 650 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 ALKAL1Q6UXT8 129 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 CHRDL2Q6WN34 429 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 TOGARAM2Q6ZUX3 1019 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 CACNA2D4Q7Z3S7 1137 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 FAM126BQ8IXS8 530 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 CCAR2Q8N163 923 aaKnown RBP12.2□□□□□ -0.46
SNX1-212ENST00000560861 KAT5Q92993 513 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 SNX27Q96L92 541 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 ADPGKQ9BRR6 497 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 SYT11Q9BT88 431 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 RNF208Q9H0X6 261 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 CXCL16Q9H2A7 254 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 RRAGDQ9NQL2 400 aaPredicted RBP12.2□□□□□ -0.46
SNX1-212ENST00000560861 ST3GAL5Q9UNP4 418 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 PIN4Q9Y237 131 aaKnown RBP12.2□□□□□ -0.46
SNX1-212ENST00000560861 REXO2Q9Y3B8 237 aaKnown RBP12.2□□□□□ -0.46
SNX1-212ENST00000560861 SQORQ9Y6N5 450 aa12.2□□□□□ -0.46
SNX1-212ENST00000560861 SSU72P8A0A1W2PR75 194 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 USP27XA6NNY8 438 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 M0QZ92 97 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 NRDCO43847 1150 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 RPS6KA5O75582 802 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 LCA5LO95447 670 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 ASS1P00966 412 aaKnown RBP12.19□□□□□ -0.46
SNX1-212ENST00000560861 PLEKP08567 350 aaPredicted RBP12.19□□□□□ -0.46
SNX1-212ENST00000560861 NFICP08651 508 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 COL6A1P12109 1028 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 RGS19P49795 217 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 NCBP1Q09161 790 aaKnown RBP12.19□□□□□ -0.46
SNX1-212ENST00000560861 RAPGEF1Q13905 1077 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 DRAP1Q14919 205 aaPredicted RBP12.19□□□□□ -0.46
SNX1-212ENST00000560861 ZBTB6Q15916 424 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 ZNF618Q5T7W0 954 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 SFMBT2Q5VUG0 894 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 JADE1Q6IE81 842 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 TRAPPC11Q7Z392 1133 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 APBB1IPQ7Z5R6 666 aaPredicted RBP12.19□□□□□ -0.46
SNX1-212ENST00000560861 NT5DC4Q86YG4 428 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 CD302Q8IX05 232 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 UBR7Q8N806 425 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 SMG8Q8ND04 991 aaKnown RBP12.19□□□□□ -0.46
SNX1-212ENST00000560861 SHC3Q92529 594 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 VTI1AQ96AJ9 217 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 ACAP3Q96P50 834 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 CCDC94Q9BW85 323 aaPredicted RBP12.19□□□□□ -0.46
SNX1-212ENST00000560861 TRAIPQ9BWF2 469 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 MTMR12Q9C0I1 747 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 PLEKHA5Q9HAU0 1116 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 APOBEC3GQ9HC16 384 aaKnown RBP12.19□□□□□ -0.46
SNX1-212ENST00000560861 CHST12Q9NRB3 414 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 SIX4Q9UIU6 781 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 NENFQ9UMX5 172 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 ADGRG1Q9Y653 693 aa12.19□□□□□ -0.46
SNX1-212ENST00000560861 SCN1AP35498 2009 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 SGPL1O95470 568 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 CST3P01034 146 aaPredicted RBP12.18□□□□□ -0.46
SNX1-212ENST00000560861 SERPING1P05155 500 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 CKBP12277 381 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 MSNP26038 577 aaKnown RBP12.18□□□□□ -0.46
SNX1-212ENST00000560861 SOX5P35711 763 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 STAT1P42224 750 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 GCNT1Q02742 428 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 PKN2Q16513 984 aaKnown RBP12.18□□□□□ -0.46
SNX1-212ENST00000560861 DUOXA2Q1HG44 320 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 SMYD5Q6GMV2 418 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 REXO1L1PQ8IX06 675 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 U2AF1L4Q8WU68 220 aaKnown RBP12.18□□□□□ -0.46
SNX1-212ENST00000560861 TATDN2Q93075 761 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 NT5C1BQ96P26 610 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 PI4K2AQ9BTU6 479 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 XYLT2Q9H1B5 865 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 NXF3Q9H4D5 531 aaKnown RBP12.18□□□□□ -0.46
SNX1-212ENST00000560861 ZNHIT6Q9NWK9 470 aaKnown RBP12.18□□□□□ -0.46
SNX1-212ENST00000560861 SNTG2Q9NY99 539 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 CNTN3Q9P232 1028 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 NOD1Q9Y239 953 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 DERAQ9Y315 318 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 C2CD2Q9Y426 696 aa12.18□□□□□ -0.46
SNX1-212ENST00000560861 EPN1Q9Y6I3 576 aaPredicted RBP12.18□□□□□ -0.46
SNX1-212ENST00000560861 UMODL1Q5DID0 1318 aa12.17□□□□□ -0.46
SNX1-212ENST00000560861 EIF3CLB5ME19 914 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms