RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 CPLX3Q8WVH0 158 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 TRIM43Q96BQ3 446 aaPredicted RBP6.96□□□□□ -1.3
SPG11-221ENST00000560299 ANKRD36BP1Q96IX9 119 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 CGRRF1Q99675 332 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 IMPG2Q9BZV3 1241 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 TRPV6Q9H1D0 765 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 MTIF3Q9H2K0 278 aaKnown RBP6.96□□□□□ -1.3
SPG11-221ENST00000560299 HIPK3Q9H422 1215 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 PLCB1Q9NQ66 1216 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 INTS13Q9NVM9 706 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 GCNT4Q9P109 453 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 CPSF3Q9UKF6 684 aaKnown RBP6.96□□□□□ -1.3
SPG11-221ENST00000560299 ATP11BQ9Y2G3 1177 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 USP20Q9Y2K6 914 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 NOC2LQ9Y3T9 749 aaKnown RBP6.96□□□□□ -1.3
SPG11-221ENST00000560299 A0A1W2PQJ5 194 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 LRRIQ3A6PVS8 624 aaPredicted RBP6.95□□□□□ -1.3
SPG11-221ENST00000560299 ABLIM1O14639 778 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 XPOTO43592 962 aaKnown RBP6.95□□□□□ -1.3
SPG11-221ENST00000560299 ZC3H11AO75152 810 aaKnown RBP eCLIP6.95□□□□□ -1.3
SPG11-221ENST00000560299 EDN1P05305 212 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 TMEM191BP0C7N4 346 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 CCDC172P0C7W6 258 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 TRIM49P0CI25 452 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 TRIM49CP0CI26 452 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 HOXA11P31270 313 aaPredicted RBP6.95□□□□□ -1.3
SPG11-221ENST00000560299 MAGEA10P43363 369 aaPredicted RBP6.95□□□□□ -1.3
SPG11-221ENST00000560299 GCLMP48507 274 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 OSTNP61366 133 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 CLDN10P78369 228 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 ZBED6P86452 979 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 FPGSQ05932 587 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 TBX2Q13207 712 aaPredicted RBP6.95□□□□□ -1.3
SPG11-221ENST00000560299 BIRC3Q13489 604 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 TRPC3Q13507 836 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 WDR44Q5JSH3 913 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 ZNF618Q5T7W0 954 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 EEF1DP3Q658K8 133 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 TRAF7Q6Q0C0 670 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 LRRC8DQ7L1W4 858 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 FAM228AQ86W67 206 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 CDR2LQ86X02 465 aaPredicted RBP6.95□□□□□ -1.3
SPG11-221ENST00000560299 LRRC8AQ8IWT6 810 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 EHBP1Q8NDI1 1231 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 FBXL13Q8NEE6 735 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 OR8K1Q8NGG5 319 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 TMEM40Q8WWA1 233 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 HERVK_113Q902F9 699 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 DHX38Q92620 1227 aaKnown RBP6.95□□□□□ -1.3
SPG11-221ENST00000560299 APBB2Q92870 758 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 PGBD4Q96DM1 585 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 PANX2Q96RD6 677 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 CRACR2AQ9BSW2 395 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 LSM14BQ9BX40 385 aaKnown RBP6.95□□□□□ -1.3
SPG11-221ENST00000560299 NAA15Q9BXJ9 866 aaKnown RBP6.95□□□□□ -1.3
SPG11-221ENST00000560299 FTHL17Q9BXU8 183 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 TMEM117Q9H0C3 514 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 PDE11AQ9HCR9 933 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 IL23AQ9NPF7 189 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 UBN1Q9NPG3 1134 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 FAM207AQ9NSI2 230 aaPredicted RBP6.95□□□□□ -1.3
SPG11-221ENST00000560299 RAB20Q9NX57 234 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 CEP72Q9P209 647 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 FBXL5Q9UKA1 691 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 PADI3Q9ULW8 664 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 MYO6Q9UM54 1294 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 CAPN11Q9UMQ6 739 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 SIK3Q9Y2K2 1263 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 DERAQ9Y315 318 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 COQ4Q9Y3A0 265 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 COL4A6Q14031 1691 aa6.95□□□□□ -1.3
SPG11-221ENST00000560299 CITO14578 2027 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 ABHD14A-ACY1A0A1B0GW23 586 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 FAM189A1O60320 539 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 MFAP3LO75121 409 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 CLSTN1O94985 981 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 CXCL8P10145 99 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 GHRP10912 638 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 ACTN1P12814 892 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 ITGB8P26012 769 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 PON1P27169 355 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 CD52P31358 61 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 CASP14P31944 242 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 KRT9P35527 623 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 TNFSF9P41273 254 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 PIK3CAP42336 1068 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 MFAP3P55082 362 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 POLR2FP61218 127 aaKnown RBP6.94□□□□□ -1.3
SPG11-221ENST00000560299 DLG4P78352 724 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 SMAD3P84022 425 aaKnown RBP6.94□□□□□ -1.3
SPG11-221ENST00000560299 TFAMQ00059 246 aaKnown RBP6.94□□□□□ -1.3
SPG11-221ENST00000560299 PPP3CAQ08209 521 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 LPIN1Q14693 890 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 TMEM132DQ14C87 1099 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 ENOX2Q16206 610 aaKnown RBP6.94□□□□□ -1.3
SPG11-221ENST00000560299 ZACNQ401N2 412 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 CBWD6Q4V339 395 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 SEZ6Q53EL9 994 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 CBWD3Q5JTY5 395 aa6.94□□□□□ -1.3
SPG11-221ENST00000560299 CBWD5Q5RIA9 395 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms