RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 RSPH1Q8WYR4 309 aa9.31□□□□□ -0.92
USP3-217ENST00000560070 HLA-CQ95604 372 aa9.31□□□□□ -0.92
USP3-217ENST00000560070 FAM84AQ96KN4 292 aa9.31□□□□□ -0.92
USP3-217ENST00000560070 APOL5Q9BWW9 433 aa9.31□□□□□ -0.92
USP3-217ENST00000560070 NGRNQ9NPE2 291 aaKnown RBP9.31□□□□□ -0.92
USP3-217ENST00000560070 MARCH5Q9NX47 278 aa9.31□□□□□ -0.92
USP3-217ENST00000560070 CNTN3Q9P232 1028 aa9.31□□□□□ -0.92
USP3-217ENST00000560070 TUBGCP4Q9UGJ1 667 aa9.31□□□□□ -0.92
USP3-217ENST00000560070 CPSF3Q9UKF6 684 aaKnown RBP9.31□□□□□ -0.92
USP3-217ENST00000560070 LZTS1Q9Y250 596 aa9.31□□□□□ -0.92
USP3-217ENST00000560070 STYXL1Q9Y6J8 313 aa9.31□□□□□ -0.92
USP3-217ENST00000560070 TANC1Q9C0D5 1861 aa9.31□□□□□ -0.92
USP3-217ENST00000560070 TTC26A0AVF1 554 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 C2orf71A6NGG8 1288 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 PODXLO00592 558 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 EIF3DO15371 548 aaKnown RBP eCLIP9.3□□□□□ -0.92
USP3-217ENST00000560070 TGFB1I1O43294 461 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 FAM189A1O60320 539 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 KIF4AO95239 1232 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 SPATA31D3P0C874 917 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 KCNE1P15382 129 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 RPL17P18621 184 aaKnown RBP9.3□□□□□ -0.92
USP3-217ENST00000560070 KCNA5P22460 613 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 WNT7BP56706 349 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 EHHADHQ08426 723 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 PSMD2Q13200 908 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 SMC1AQ14683 1233 aaKnown RBP9.3□□□□□ -0.92
USP3-217ENST00000560070 CAMK4Q16566 473 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 KYAT1Q16773 422 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 KNOP1Q1ED39 458 aaKnown RBP9.3□□□□□ -0.92
USP3-217ENST00000560070 FAM171A1Q5VUB5 890 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 LMBRD2Q68DH5 695 aaPredicted RBP9.3□□□□□ -0.92
USP3-217ENST00000560070 FUT10Q6P4F1 479 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 SPATA31D4Q6ZUB0 917 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 SMYD4Q8IYR2 804 aaPredicted RBP9.3□□□□□ -0.92
USP3-217ENST00000560070 RIN2Q8WYP3 895 aaPredicted RBP9.3□□□□□ -0.92
USP3-217ENST00000560070 CCDC34Q96HJ3 373 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 ZBP1Q9H171 429 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 PLEKHA5Q9HAU0 1116 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 MRPL17Q9NRX2 175 aaKnown RBP9.3□□□□□ -0.92
USP3-217ENST00000560070 AGPAT3Q9NRZ7 376 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 ADAM28Q9UKQ2 775 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 PCDHA5Q9Y5H7 936 aa9.3□□□□□ -0.92
USP3-217ENST00000560070 ZNF233A6NK53 670 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 BIN1O00499 593 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 PPEF2O14830 753 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 EXTL3O43909 919 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 KINO60870 393 aaKnown RBP9.29□□□□□ -0.92
USP3-217ENST00000560070 CLASP2O75122 1294 aaKnown RBP9.29□□□□□ -0.92
USP3-217ENST00000560070 SMC2O95347 1197 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 LDHAP00338 332 aaKnown RBP9.29□□□□□ -0.92
USP3-217ENST00000560070 SOD2P04179 222 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 NFICP08651 508 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 CTSAP10619 480 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 GARTP22102 1010 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 NDUFV1P49821 464 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 UBE2HP62256 183 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 TFAMQ00059 246 aaKnown RBP9.29□□□□□ -0.92
USP3-217ENST00000560070 DLX2Q07687 328 aaPredicted RBP9.29□□□□□ -0.92
USP3-217ENST00000560070 ADAM15Q13444 863 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 UPP1Q16831 310 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 SCARA3Q6AZY7 606 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 PDE12Q6L8Q7 609 aaKnown RBP9.29□□□□□ -0.92
USP3-217ENST00000560070 PRSS55Q6UWB4 352 aaPredicted RBP9.29□□□□□ -0.92
USP3-217ENST00000560070 CD300LGQ6UXG3 332 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 PALB2Q86YC2 1186 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 CBWD2Q8IUF1 395 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.29□□□□□ -0.92
USP3-217ENST00000560070 KIAA0895Q8NCT3 520 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 C3orf58Q8NDZ4 430 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 BEST2Q8NFU1 509 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 KCNN1Q92952 543 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 SMARCE1Q969G3 411 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 PPP2R3CQ969Q6 453 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 DDX27Q96GQ7 796 aaKnown RBP9.29□□□□□ -0.92
USP3-217ENST00000560070 KLHL5Q96PQ7 755 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 UBE2ZQ9H832 354 aaPredicted RBP9.29□□□□□ -0.92
USP3-217ENST00000560070 PDE11AQ9HCR9 933 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 SLC38A7Q9NVC3 462 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 RBAKQ9NYW8 714 aaPredicted RBP9.29□□□□□ -0.92
USP3-217ENST00000560070 HSPBP1Q9NZL4 362 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 BARX2Q9UMQ3 279 aaPredicted RBP9.29□□□□□ -0.92
USP3-217ENST00000560070 NUB1Q9Y5A7 615 aa9.29□□□□□ -0.92
USP3-217ENST00000560070 TIMM13Q9Y5L4 95 aaPredicted RBP9.29□□□□□ -0.92
USP3-217ENST00000560070 ZMYM2Q9UBW7 1377 aa9.28□□□□□ -0.92
USP3-217ENST00000560070 KAT6AQ92794 2004 aa9.28□□□□□ -0.92
USP3-217ENST00000560070 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.28□□□□□ -0.92
USP3-217ENST00000560070 CARNS1A5YM72 827 aa9.28□□□□□ -0.92
USP3-217ENST00000560070 SPDYE4A6NLX3 237 aa9.28□□□□□ -0.92
USP3-217ENST00000560070 EXOC3O60645 756 aa9.28□□□□□ -0.92
USP3-217ENST00000560070 RHOBTB3O94955 611 aa9.28□□□□□ -0.92
USP3-217ENST00000560070 MYL1P05976 194 aa9.28□□□□□ -0.92
USP3-217ENST00000560070 URODP06132 367 aa9.28□□□□□ -0.92
USP3-217ENST00000560070 CNPP09543 421 aaKnown RBP9.28□□□□□ -0.92
USP3-217ENST00000560070 EPCAMP16422 314 aa9.28□□□□□ -0.92
USP3-217ENST00000560070 TKTP29401 623 aaKnown RBP9.28□□□□□ -0.92
USP3-217ENST00000560070 RPL9P32969 192 aaKnown RBP9.28□□□□□ -0.92
USP3-217ENST00000560070 GLUD2P49448 558 aa9.28□□□□□ -0.92
USP3-217ENST00000560070 KCNQ1P51787 676 aa9.28□□□□□ -0.92
USP3-217ENST00000560070 CDR1P51861 262 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms