RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 IFIH1Q9BYX4 1025 aaKnown RBP13.17□□□□□ -0.3
HERC1-205ENST00000559886 HIPK3Q9H422 1215 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 RAB20Q9NX57 234 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 ATP11BQ9Y2G3 1177 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 LRRN2O75325 713 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 UCHL3P15374 230 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 POLR2FP61218 127 aaKnown RBP13.17□□□□□ -0.3
HERC1-205ENST00000559886 TFAMQ00059 246 aaKnown RBP13.17□□□□□ -0.3
HERC1-205ENST00000559886 LRRC26Q2I0M4 334 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 JADE1Q6IE81 842 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 NT5DC4Q86YG4 428 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 PANX2Q96RD6 677 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 MTMR12Q9C0I1 747 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 RNF39Q9H2S5 420 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 TBX21Q9UL17 535 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 C2CD2Q9Y426 696 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 UMODL1Q5DID0 1318 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 NBNO60934 754 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 ZNF623O75123 536 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 VNN1O95497 513 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 NFICP08651 508 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 AKAP5P24588 427 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 BIRC3Q13489 604 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 TRAPPC11Q7Z392 1133 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 ZNF397Q8NF99 534 aaPredicted RBP13.16□□□□□ -0.3
HERC1-205ENST00000559886 BAP1Q92560 729 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 ANKRD36BP1Q96IX9 119 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 ZNF830Q96NB3 372 aaPredicted RBP13.16□□□□□ -0.3
HERC1-205ENST00000559886 DNAJC7Q99615 494 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 ADAM2Q99965 735 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 KCNF1Q9H3M0 494 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 ABHD10Q9NUJ1 306 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 CNTN3Q9P232 1028 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 APEX2Q9UBZ4 518 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 DERAQ9Y315 318 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 DAAM1Q9Y4D1 1078 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 A0A0U1RQF3 1178 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 HLA-DRAP01903 254 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 TNNC2P02585 160 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 TMEM191BP0C7N4 346 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 RAB27AP51159 221 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 LRMPQ12912 555 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 XKR4Q5GH76 650 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 PHLDB3Q6NSJ2 640 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 FAM43BQ6ZT52 329 aaPredicted RBP13.16□□□□□ -0.3
HERC1-205ENST00000559886 CACNA2D4Q7Z3S7 1137 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 MRPL10Q7Z7H8 261 aaKnown RBP13.16□□□□□ -0.3
HERC1-205ENST00000559886 OR8K1Q8NGG5 319 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 APOL6Q9BWW8 343 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 NAA15Q9BXJ9 866 aaKnown RBP13.16□□□□□ -0.3
HERC1-205ENST00000559886 NLRC4Q9NPP4 1024 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 FHOD1Q9Y613 1164 aa13.16□□□□□ -0.3
HERC1-205ENST00000559886 ZC3H11AO75152 810 aaKnown RBP eCLIP13.15□□□□□ -0.3
HERC1-205ENST00000559886 PHACTR2O75167 634 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 PARNO95453 639 aaKnown RBP13.15□□□□□ -0.3
HERC1-205ENST00000559886 RFX1P22670 979 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 TMEM132DQ14C87 1099 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 PLEKHG4Q58EX7 1191 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 UBE2Q1Q7Z7E8 422 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 HACE1Q8IYU2 909 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 TSPAN18Q96SJ8 248 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 WNT8AQ9H1J5 351 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 CXCL16Q9H2A7 254 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 PARP2Q9UGN5 583 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 CLTBP09497 229 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 EN2P19622 333 aaPredicted RBP13.15□□□□□ -0.3
HERC1-205ENST00000559886 PIK3CAP42336 1068 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 NCOA4Q13772 614 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 ZBTB6Q15916 424 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 IQCEQ6IPM2 695 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 GJB7Q6PEY0 223 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 RTN4RL1Q86UN2 441 aaPredicted RBP13.15□□□□□ -0.3
HERC1-205ENST00000559886 ZMAT2Q96NC0 199 aaKnown RBP13.15□□□□□ -0.3
HERC1-205ENST00000559886 FTHL17Q9BXU8 183 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 NUCKS1Q9H1E3 243 aaKnown RBP13.15□□□□□ -0.3
HERC1-205ENST00000559886 RGS18Q9NS28 235 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 TMEM39AQ9NV64 488 aa13.15□□□□□ -0.3
HERC1-205ENST00000559886 CST3P01034 146 aaPredicted RBP13.14□□□□□ -0.31
HERC1-205ENST00000559886 SKIP12755 728 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 ITGA4P13612 1032 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 KCNE1P15382 129 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 FECHP22830 423 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 CCZ1BP86790 482 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 CCZ1P86791 482 aaPredicted RBP13.14□□□□□ -0.31
HERC1-205ENST00000559886 PDXDC1Q6P996 788 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 RRAGAQ7L523 313 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 TMEM139Q8IV31 216 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 KIF12Q96FN5 646 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 NT5C1BQ96P26 610 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 PPP1R12CQ9BZL4 782 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 KLK14Q9P0G3 267 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 DNAJC12Q9UKB3 198 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 AJAP1Q9UKB5 411 aaPredicted RBP13.14□□□□□ -0.31
HERC1-205ENST00000559886 MYO6Q9UM54 1294 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 PLAGL2Q9UPG8 496 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.14□□□□□ -0.31
HERC1-205ENST00000559886 CXCL10P02778 98 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 ATF7P17544 494 aaPredicted RBP13.14□□□□□ -0.31
HERC1-205ENST00000559886 HNRNPH3P31942 346 aaKnown RBP13.14□□□□□ -0.31
HERC1-205ENST00000559886 CYP2C18P33260 490 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms