RNA–Protein interactions for RNA: ENST00000557644.5

NEDD1-213, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 1 (best) BASIC

Gene NEDD1, Length 2,367 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-213ENST00000557644 DNAJB4Q9UDY4 337 aa16.58■□□□□ 0.24
NEDD1-213ENST00000557644 TUBGCP4Q9UGJ1 667 aa16.58■□□□□ 0.24
NEDD1-213ENST00000557644 EPB41P11171 864 aaKnown RBP16.57■□□□□ 0.24
NEDD1-213ENST00000557644 PBX3P40426 434 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 POU5F1Q01860 360 aaKnown RBP16.57■□□□□ 0.24
NEDD1-213ENST00000557644 PSMD6Q15008 389 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 SPATA1Q5VX52 437 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 LRSAM1Q6UWE0 723 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 FILIP1Q7Z7B0 1213 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 LRRC43Q8N309 656 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 SP7Q8TDD2 431 aaPredicted RBP16.57■□□□□ 0.24
NEDD1-213ENST00000557644 ASB7Q9H672 318 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 CWH43Q9H720 699 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 NRDE2Q9H7Z3 1164 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 IL18RAPO95256 599 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 GRIK3Q13003 919 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 NCAPHQ15003 741 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 SCARA3Q6AZY7 606 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 OR5B17Q8NGF7 314 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 PARD3BQ8TEW8 1205 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 PAAF1Q9BRP4 392 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 MKNK1Q9BUB5 465 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 MRPL9Q9BYD2 267 aaKnown RBP16.57■□□□□ 0.24
NEDD1-213ENST00000557644 NAT10Q9H0A0 1025 aaKnown RBP16.57■□□□□ 0.24
NEDD1-213ENST00000557644 KANSL3Q9P2N6 904 aa16.57■□□□□ 0.24
NEDD1-213ENST00000557644 CASTOR2A6NHX0 329 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 LRRIQ3A6PVS8 624 aaPredicted RBP16.56■□□□□ 0.24
NEDD1-213ENST00000557644 SLC16A3O15427 465 aaKnown RBP16.56■□□□□ 0.24
NEDD1-213ENST00000557644 ZC3H11AO75152 810 aaKnown RBP eCLIP16.56■□□□□ 0.24
NEDD1-213ENST00000557644 LINC00271P0C7V0 271 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 TRIM49P0CI25 452 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 TRIM49CP0CI26 452 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 TFAMQ00059 246 aaKnown RBP16.56■□□□□ 0.24
NEDD1-213ENST00000557644 MYL5Q02045 173 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 TMEM132DQ14C87 1099 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 ZBTB6Q15916 424 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 C1orf220Q5T0J3 134 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 CREBRFQ8IUR6 639 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 CD302Q8IX05 232 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 DHX40Q8IX18 779 aaKnown RBP16.56■□□□□ 0.24
NEDD1-213ENST00000557644 FNBP1Q96RU3 617 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 FANCLQ9NW38 375 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 PCDHA11Q9Y5I1 949 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 MAPK13O15264 365 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 VAMP7P51809 220 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 ZNF445P59923 1031 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 DSC1Q08554 894 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 BFSP1Q12934 665 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 INTS8Q75QN2 995 aaKnown RBP16.56■□□□□ 0.24
NEDD1-213ENST00000557644 FIBCD1Q8N539 461 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 ZNF516Q92618 1163 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 MTMR12Q9C0I1 747 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 ANK1P16157 1881 aa16.56■□□□□ 0.24
NEDD1-213ENST00000557644 GBF1Q92538 1859 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 A0A1W2PPC1 479 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 LINC01553A4QN01 128 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 F8W810 466 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 TNNI1P19237 187 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 IGFBP6P24592 240 aaPredicted RBP16.55■□□□□ 0.24
NEDD1-213ENST00000557644 CCDC40Q4G0X9 1142 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 SPOUT1Q5T280 376 aaKnown RBP16.55■□□□□ 0.24
NEDD1-213ENST00000557644 COLGALT2Q8IYK4 626 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 BPIFA3Q9BQP9 254 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 NKX2-4Q9H2Z4 354 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 TSPY26PQ9H489 355 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 CBX8Q9HC52 389 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 ARMCX3Q9UH62 379 aaPredicted RBP16.55■□□□□ 0.24
NEDD1-213ENST00000557644 C2CD2Q9Y426 696 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 NT5C1B-RDH14C9J2C7 533 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 IQCB1Q15051 598 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 DCAF17Q5H9S7 520 aaPredicted RBP16.55■□□□□ 0.24
NEDD1-213ENST00000557644 LUZP1Q86V48 1076 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 CNOT6LQ96LI5 555 aaKnown RBP16.55■□□□□ 0.24
NEDD1-213ENST00000557644 FAM193BQ96PV7 902 aaPredicted RBP16.55■□□□□ 0.24
NEDD1-213ENST00000557644 CGRRF1Q99675 332 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 HSD3B7Q9H2F3 369 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 THAP9Q9H5L6 903 aa16.55■□□□□ 0.24
NEDD1-213ENST00000557644 RALGAPA2Q2PPJ7 1873 aa16.54■□□□□ 0.24
NEDD1-213ENST00000557644 FGFR1OPO95684 399 aaKnown RBP16.54■□□□□ 0.24
NEDD1-213ENST00000557644 KRT13P13646 458 aa16.54■□□□□ 0.24
NEDD1-213ENST00000557644 DNAJB2P25686 324 aa16.54■□□□□ 0.24
NEDD1-213ENST00000557644 TUSC3Q13454 348 aa16.54■□□□□ 0.24
NEDD1-213ENST00000557644 HSP90AA2PQ14568 343 aaPredicted RBP16.54■□□□□ 0.24
NEDD1-213ENST00000557644 LRIT3Q3SXY7 679 aa16.54■□□□□ 0.24
NEDD1-213ENST00000557644 FRMD5Q7Z6J6 570 aa16.54■□□□□ 0.24
NEDD1-213ENST00000557644 TMC2Q8TDI7 906 aa16.54■□□□□ 0.24
NEDD1-213ENST00000557644 MMRN2Q9H8L6 949 aa16.54■□□□□ 0.24
NEDD1-213ENST00000557644 INTS13Q9NVM9 706 aa16.54■□□□□ 0.24
NEDD1-213ENST00000557644 MSRAQ9UJ68 235 aa16.54■□□□□ 0.24
NEDD1-213ENST00000557644 MTUS1Q9ULD2 1270 aa16.54■□□□□ 0.24
NEDD1-213ENST00000557644 UBQLN1Q9UMX0 589 aaKnown RBP16.54■□□□□ 0.24
NEDD1-213ENST00000557644 DERAQ9Y315 318 aa16.54■□□□□ 0.24
NEDD1-213ENST00000557644 SLC11A1P49279 550 aa16.53■□□□□ 0.24
NEDD1-213ENST00000557644 CLCNKBP51801 687 aa16.53■□□□□ 0.24
NEDD1-213ENST00000557644 BCAR1P56945 870 aa16.53■□□□□ 0.24
NEDD1-213ENST00000557644 PPP3CAQ08209 521 aa16.53■□□□□ 0.24
NEDD1-213ENST00000557644 SURF1Q15526 300 aa16.53■□□□□ 0.24
NEDD1-213ENST00000557644 TCERG1LQ5VWI1 586 aa16.53■□□□□ 0.24
NEDD1-213ENST00000557644 TMEM173Q86WV6 379 aaPredicted RBP16.53■□□□□ 0.24
NEDD1-213ENST00000557644 WDR49Q8IV35 697 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms