RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SMARCE1Q969G3 411 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 FAM212AQ96EL1 285 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 SAAL1Q96ER3 474 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 UROC1Q96N76 676 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 TCF25Q9BQ70 676 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 PAAF1Q9BRP4 392 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 FAM213AQ9BRX8 229 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 PCIF1Q9H4Z3 704 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 NGRNQ9NPE2 291 aaKnown RBP14.78□□□□□ -0.04
SHMT2-228ENST00000557302 AGPAT3Q9NRZ7 376 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 CACNG4Q9UBN1 327 aa14.78□□□□□ -0.04
SHMT2-228ENST00000557302 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-228ENST00000557302 TDRD15B5MCY1 1934 aaKnown RBP14.78□□□□□ -0.04
SHMT2-228ENST00000557302 SPTBN5Q9NRC6 3674 aaKnown RBP14.78□□□□□ -0.04
SHMT2-228ENST00000557302 F8W810 466 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 TGFB1I1O43294 461 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 XPOTO43592 962 aaKnown RBP14.77□□□□□ -0.05
SHMT2-228ENST00000557302 EXTL3O43909 919 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 ADRB2P07550 413 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 SOX4Q06945 474 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-228ENST00000557302 SPAG1Q07617 926 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 SMC1AQ14683 1233 aaKnown RBP14.77□□□□□ -0.05
SHMT2-228ENST00000557302 TCEAL5Q5H9L2 206 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 PLPP4Q5VZY2 271 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 CRELD2Q6UXH1 353 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-228ENST00000557302 GPD1LQ8N335 351 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 GOLGA5Q8TBA6 731 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 NOC3LQ8WTT2 800 aaKnown RBP14.77□□□□□ -0.05
SHMT2-228ENST00000557302 C18orf25Q96B23 403 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-228ENST00000557302 KIF12Q96FN5 646 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 DDX27Q96GQ7 796 aaKnown RBP14.77□□□□□ -0.05
SHMT2-228ENST00000557302 GSDMAQ96QA5 445 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 TSPAN18Q96SJ8 248 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 VN1R3Q9BXE9 311 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 ZBP1Q9H171 429 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 ASB7Q9H672 318 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 GOLGA2P5Q9HBQ8 144 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 CGNQ9P2M7 1197 aaKnown RBP14.77□□□□□ -0.05
SHMT2-228ENST00000557302 ADAM28Q9UKQ2 775 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 UBQLN1Q9UMX0 589 aaKnown RBP14.77□□□□□ -0.05
SHMT2-228ENST00000557302 PCDHGC5Q9Y5F6 944 aa14.77□□□□□ -0.05
SHMT2-228ENST00000557302 PLXNA4Q9HCM2 1894 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 GOLGA8IPA6NC78 632 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 GOLGA8JA6NMD2 632 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 CLIC2O15247 247 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 TADA2AO75478 443 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 KIF4AO95239 1232 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 IL18RAPO95256 599 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 RPL9P32969 192 aaKnown RBP14.76□□□□□ -0.05
SHMT2-228ENST00000557302 CA8P35219 290 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 CLCNKBP51801 687 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 TMEM132DQ14C87 1099 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 FUT10Q6P4F1 479 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 DCLRE1AQ6PJP8 1040 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 BRSK2Q8IWQ3 736 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 ZSWIM2Q8NEG5 633 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 HERC2P3Q9BVR0 1158 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 KIAA1586Q9HCI6 787 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 RBAKQ9NYW8 714 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-228ENST00000557302 HSPBP1Q9NZL4 362 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 TUBGCP4Q9UGJ1 667 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 DERAQ9Y315 318 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 PCDHA5Q9Y5H7 936 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 CITO14578 2027 aa14.76□□□□□ -0.05
SHMT2-228ENST00000557302 SF3B1O75533 1304 aaKnown RBP eCLIP14.75□□□□□ -0.05
SHMT2-228ENST00000557302 GOLGA6L22H0YM25 854 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 TMEM189-UBE2V1I3L0A0 370 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 TULP1O00294 542 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-228ENST00000557302 DLL1O00548 723 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 PODXLO00592 558 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 B3GAT3O94766 335 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 CXCL14O95715 111 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 EFEMP2O95967 443 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 SOD2P04179 222 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 URODP06132 367 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 CTSAP10619 480 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 CYP3A5P20815 502 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 CYP2J2P51589 502 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 ELAVL2Q12926 359 aaKnown RBP14.75□□□□□ -0.05
SHMT2-228ENST00000557302 ZBTB6Q15916 424 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 UPP1Q16831 310 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 JADE1Q6IE81 842 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 ADGRD2Q7Z7M1 963 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 C12orf56Q8IXR9 622 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 GUF1Q8N442 669 aaKnown RBP14.75□□□□□ -0.05
SHMT2-228ENST00000557302 SPATA20Q8TB22 786 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 HASPINQ8TF76 798 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 ERCC4Q92889 916 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-228ENST00000557302 GTPBP4Q9BZE4 634 aaKnown RBP14.75□□□□□ -0.05
SHMT2-228ENST00000557302 TLE6Q9H808 572 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 C2CD2Q9Y426 696 aa14.75□□□□□ -0.05
SHMT2-228ENST00000557302 MUC3AQ02505 3323 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-228ENST00000557302 ZNF233A6NK53 670 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 HIDE1A8MVS5 230 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 PDXKO00764 312 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 NCK2O43639 380 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 NFICP08651 508 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 NRIP1P48552 1158 aa14.74□□□□□ -0.05
SHMT2-228ENST00000557302 GLUD2P49448 558 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms