RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 OR5B17Q8NGF7 314 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 URGCPQ8TCY9 931 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 PARD3BQ8TEW8 1205 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 ZNF516Q92618 1163 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 KIF12Q96FN5 646 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 CEP63Q96MT8 703 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 PAAF1Q9BRP4 392 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 NKX2-4Q9H2Z4 354 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 ASB7Q9H672 318 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 GOLGA2P5Q9HBQ8 144 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 SAMSN1Q9NSI8 373 aaKnown RBP13.91□□□□□ -0.18
SHMT2-227ENST00000557269 TRIP11Q15643 1979 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 LINC01553A4QN01 128 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 LRRIQ3A6PVS8 624 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-227ENST00000557269 F8W810 466 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 MAPK13O15264 365 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 SLC16A3O15427 465 aaKnown RBP13.9□□□□□ -0.18
SHMT2-227ENST00000557269 IL18RAPO95256 599 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 THP07101 528 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 TRIM49P0CI25 452 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 TRIM49CP0CI26 452 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 DLATP10515 647 aaKnown RBP13.9□□□□□ -0.18
SHMT2-227ENST00000557269 ZNF165P49910 485 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 ZNF445P59923 1031 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 MCCD1P59942 119 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-227ENST00000557269 RNASELQ05823 741 aaKnown RBP13.9□□□□□ -0.18
SHMT2-227ENST00000557269 GRIK3Q13003 919 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 LRSAM1Q6UWE0 723 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 CD302Q8IX05 232 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 COLGALT2Q8IYK4 626 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 LRRC43Q8N309 656 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 FIBCD1Q8N539 461 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 AOPEPQ8N6M6 819 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 MKNK1Q9BUB5 465 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 MRPL9Q9BYD2 267 aaKnown RBP13.9□□□□□ -0.18
SHMT2-227ENST00000557269 HSD3B7Q9H2F3 369 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 FANCLQ9NW38 375 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 KANSL3Q9P2N6 904 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 NFE2L3Q9Y4A8 694 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 RALGAPA2Q2PPJ7 1873 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 CITO14578 2027 aa13.9□□□□□ -0.18
SHMT2-227ENST00000557269 A0A1W2PPC1 479 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 CASTOR2A6NHX0 329 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 SOX1O00570 391 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-227ENST00000557269 EPB41P11171 864 aaKnown RBP13.89□□□□□ -0.19
SHMT2-227ENST00000557269 SLC11A1P49279 550 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 VAMP7P51809 220 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 CLDN10P78369 228 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 SMAD3P84022 425 aaKnown RBP13.89□□□□□ -0.19
SHMT2-227ENST00000557269 TFAMQ00059 246 aaKnown RBP13.89□□□□□ -0.19
SHMT2-227ENST00000557269 TAP1Q03518 808 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 PPP3CAQ08209 521 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 TMEM132DQ14C87 1099 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 IQCB1Q15051 598 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 LRIT3Q3SXY7 679 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 TMC2Q8TDI7 906 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 BCL7CQ8WUZ0 217 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-227ENST00000557269 CGRRF1Q99675 332 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 BPIFA3Q9BQP9 254 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 MTMR12Q9C0I1 747 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 CBX8Q9HC52 389 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 INTS13Q9NVM9 706 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 DERAQ9Y315 318 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 C2CD2Q9Y426 696 aa13.89□□□□□ -0.19
SHMT2-227ENST00000557269 PDCD11Q14690 1871 aaKnown RBP13.89□□□□□ -0.19
SHMT2-227ENST00000557269 NT5C1B-RDH14C9J2C7 533 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 PPEF2O14830 753 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 ZC3H11AO75152 810 aaKnown RBP eCLIP13.88□□□□□ -0.19
SHMT2-227ENST00000557269 GALTP07902 379 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 CLCNKBP51801 687 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 BCAR1P56945 870 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 MYL5Q02045 173 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 BFSP1Q12934 665 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 TUSC3Q13454 348 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 TPD52L1Q16890 204 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-227ENST00000557269 CCDC40Q4G0X9 1142 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 CDKAL1Q5VV42 579 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 CD300LGQ6UXG3 332 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 INTS8Q75QN2 995 aaKnown RBP13.88□□□□□ -0.19
SHMT2-227ENST00000557269 FRMD5Q7Z6J6 570 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 TMEM173Q86WV6 379 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-227ENST00000557269 WDR49Q8IV35 697 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 COLGALT1Q8NBJ5 622 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 CXorf38Q8TB03 319 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 CLP1Q92989 425 aaKnown RBP13.88□□□□□ -0.19
SHMT2-227ENST00000557269 CNOT6LQ96LI5 555 aaKnown RBP13.88□□□□□ -0.19
SHMT2-227ENST00000557269 FNBP1Q96RU3 617 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 C17orf80Q9BSJ5 609 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 NAT10Q9H0A0 1025 aaKnown RBP13.88□□□□□ -0.19
SHMT2-227ENST00000557269 TSPY26PQ9H489 355 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 THAP9Q9H5L6 903 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 ARMCX3Q9UH62 379 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-227ENST00000557269 MSRAQ9UJ68 235 aa13.88□□□□□ -0.19
SHMT2-227ENST00000557269 UBQLN1Q9UMX0 589 aaKnown RBP13.88□□□□□ -0.19
SHMT2-227ENST00000557269 TDRD15B5MCY1 1934 aaKnown RBP13.88□□□□□ -0.19
SHMT2-227ENST00000557269 KIAA1671Q9BY89 1806 aa13.87□□□□□ -0.19
SHMT2-227ENST00000557269 NRP1O14786 923 aa13.87□□□□□ -0.19
SHMT2-227ENST00000557269 C4BPAP04003 597 aaKnown RBP13.87□□□□□ -0.19
SHMT2-227ENST00000557269 ITGB1P05556 798 aa13.87□□□□□ -0.19
SHMT2-227ENST00000557269 KRT13P13646 458 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms