RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 CAPN12Q6ZSI9 719 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 ANO5Q75V66 913 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 TSEN2Q8NCE0 465 aaKnown RBP11.17□□□□□ -0.62
SCFD1-220ENST00000556486 BAP1Q92560 729 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 STAMQ92783 540 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 FGF14Q92915 247 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 FOXJ1Q92949 421 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 FAM20AQ96MK3 541 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 FAM193BQ96PV7 902 aaPredicted RBP11.17□□□□□ -0.62
SCFD1-220ENST00000556486 STK39Q9UEW8 545 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 VAV3Q9UKW4 847 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 SMG5Q9UPR3 1016 aaKnown RBP11.17□□□□□ -0.62
SCFD1-220ENST00000556486 FAN1Q9Y2M0 1017 aa11.17□□□□□ -0.62
SCFD1-220ENST00000556486 ESPNB1AK53 854 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 CPLX1O14810 134 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 TBX3O15119 743 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 LAMTOR5O43504 91 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 RECKO95980 971 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 GLUD1P00367 558 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 LAMP2P13473 410 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 GCFC2P16383 781 aaKnown RBP11.16□□□□□ -0.62
SCFD1-220ENST00000556486 PSMC5P62195 406 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 C4orf48Q5BLP8 95 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 CPLX2Q6PUV4 134 aaKnown RBP11.16□□□□□ -0.62
SCFD1-220ENST00000556486 PARM1Q6UWI2 310 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 CATSPER4Q7RTX7 472 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 KRT25Q7Z3Z0 450 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 RHPN2Q8IUC4 686 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 EXOC8Q8IYI6 725 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 URGCPQ8TCY9 931 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 ATRIPQ8WXE1 791 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 RABGGTAQ92696 567 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 NLRP4Q96MN2 994 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 RPS6KC1Q96S38 1066 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 DHX33Q9H6R0 707 aaKnown RBP11.16□□□□□ -0.62
SCFD1-220ENST00000556486 IFT122Q9HBG6 1241 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 PARD6AQ9NPB6 346 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 MARCH5Q9NX47 278 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 DDX25Q9UHL0 483 aaKnown RBP11.16□□□□□ -0.62
SCFD1-220ENST00000556486 PCDHB2Q9Y5E7 798 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 CYP46A1Q9Y6A2 500 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 FRYQ5TBA9 3013 aa11.16□□□□□ -0.62
SCFD1-220ENST00000556486 MTCL1Q9Y4B5 1905 aaKnown RBP11.15□□□□□ -0.62
SCFD1-220ENST00000556486 STK36Q9NRP7 1315 aa11.15□□□□□ -0.62
SCFD1-220ENST00000556486 GAS2O43903 313 aaKnown RBP11.15□□□□□ -0.62
SCFD1-220ENST00000556486 DKC1O60832 514 aaKnown RBP eCLIP11.15□□□□□ -0.62
SCFD1-220ENST00000556486 SOD2P04179 222 aa11.15□□□□□ -0.62
SCFD1-220ENST00000556486 ADH1AP07327 375 aa11.15□□□□□ -0.62
SCFD1-220ENST00000556486 OR1G1P47890 313 aa11.15□□□□□ -0.62
SCFD1-220ENST00000556486 QARSP47897 775 aaKnown RBP11.15□□□□□ -0.62
SCFD1-220ENST00000556486 KIAA0319Q5VV43 1072 aa11.15□□□□□ -0.62
SCFD1-220ENST00000556486 MRPL10Q7Z7H8 261 aaKnown RBP11.15□□□□□ -0.62
SCFD1-220ENST00000556486 CMASQ8NFW8 434 aaPredicted RBP11.15□□□□□ -0.62
SCFD1-220ENST00000556486 KXD1Q9BQD3 176 aa11.15□□□□□ -0.62
SCFD1-220ENST00000556486 PHF20Q9BVI0 1012 aa11.15□□□□□ -0.62
SCFD1-220ENST00000556486 RSAD1Q9HA92 442 aa11.15□□□□□ -0.62
SCFD1-220ENST00000556486 AGPAT5Q9NUQ2 364 aa11.15□□□□□ -0.62
SCFD1-220ENST00000556486 SUCLA2Q9P2R7 463 aaPredicted RBP11.15□□□□□ -0.62
SCFD1-220ENST00000556486 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.15□□□□□ -0.62
SCFD1-220ENST00000556486 TDRD15B5MCY1 1934 aaKnown RBP11.15□□□□□ -0.62
SCFD1-220ENST00000556486 KANSL1LA0AUZ9 987 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 FAM170BA6NMN3 283 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 ANHXE9PGG2 379 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 EML1O00423 815 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 TGM5O43548 720 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 SLC37A4O43826 429 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 CDKL5O76039 1030 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 ALDH2P05091 517 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 P4HBP07237 508 aaKnown RBP11.14□□□□□ -0.63
SCFD1-220ENST00000556486 GLUD2P49448 558 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 STARD6P59095 220 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 SPEM2Q0P670 501 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 PCBP1Q15365 356 aaKnown RBP eCLIP11.14□□□□□ -0.63
SCFD1-220ENST00000556486 LINC01559Q495D7 138 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 PPM1JQ5JR12 505 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 SRGAP1Q7Z6B7 1085 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 GRASPQ7Z6J2 395 aaPredicted RBP11.14□□□□□ -0.63
SCFD1-220ENST00000556486 NEK8Q86SG6 692 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 C4orf19Q8IY42 314 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 RGL4Q8IZJ4 473 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 SLC7A3Q8WY07 619 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 AIFM3Q96NN9 605 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 NAP1L4Q99733 375 aaKnown RBP11.14□□□□□ -0.63
SCFD1-220ENST00000556486 HERC2P3Q9BVR0 1158 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 BCO2Q9BYV7 579 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 NT5C3AQ9H0P0 336 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 SLC2A4RGQ9NR83 387 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 CACNG4Q9UBN1 327 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 COL4A3BPQ9Y5P4 624 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 BAHCC1Q9P281 2608 aa11.14□□□□□ -0.63
SCFD1-220ENST00000556486 CNTNAP2Q9UHC6 1331 aa11.13□□□□□ -0.63
SCFD1-220ENST00000556486 ADRB1P08588 477 aa11.13□□□□□ -0.63
SCFD1-220ENST00000556486 TGM1P22735 817 aa11.13□□□□□ -0.63
SCFD1-220ENST00000556486 FSHRP23945 695 aa11.13□□□□□ -0.63
SCFD1-220ENST00000556486 HOXA11P31270 313 aaPredicted RBP11.13□□□□□ -0.63
SCFD1-220ENST00000556486 LMNB2Q03252 620 aa11.13□□□□□ -0.63
SCFD1-220ENST00000556486 SPIRE1Q08AE8 756 aa11.13□□□□□ -0.63
SCFD1-220ENST00000556486 MLF2Q15773 248 aaPredicted RBP11.13□□□□□ -0.63
SCFD1-220ENST00000556486 INF2Q27J81 1249 aa11.13□□□□□ -0.63
SCFD1-220ENST00000556486 PLA2G4FQ68DD2 849 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms