RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 CHST12Q9NRB3 414 aa11.67□□□□□ -0.54
TDP1-211ENST00000555178 PARP2Q9UGN5 583 aa11.67□□□□□ -0.54
TDP1-211ENST00000555178 CDH23Q9H251 3354 aa11.67□□□□□ -0.54
TDP1-211ENST00000555178 A0A0U1RQF3 1178 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 MAPK13O15264 365 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 PTMAP06454 111 aaKnown RBP11.66□□□□□ -0.54
TDP1-211ENST00000555178 ZSCAN20P17040 1043 aaPredicted RBP11.66□□□□□ -0.54
TDP1-211ENST00000555178 CAPN2P17655 700 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 SLC9A1P19634 815 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 SOX4Q06945 474 aaPredicted RBP11.66□□□□□ -0.54
TDP1-211ENST00000555178 NCBP1Q09161 790 aaKnown RBP11.66□□□□□ -0.54
TDP1-211ENST00000555178 TBX2Q13207 712 aaPredicted RBP11.66□□□□□ -0.54
TDP1-211ENST00000555178 PSMD6Q15008 389 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 PCBP1Q15365 356 aaKnown RBP eCLIP11.66□□□□□ -0.54
TDP1-211ENST00000555178 DCAF4L1Q3SXM0 396 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 CLLU1OSQ5K130 101 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 MRPL10Q7Z7H8 261 aaKnown RBP11.66□□□□□ -0.54
TDP1-211ENST00000555178 PCMTD1Q96MG8 357 aaPredicted RBP11.66□□□□□ -0.54
TDP1-211ENST00000555178 ACAP3Q96P50 834 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 GAD1Q99259 594 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 TMEM117Q9H0C3 514 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 CXXC1Q9P0U4 656 aaPredicted RBP11.66□□□□□ -0.54
TDP1-211ENST00000555178 GCNT4Q9P109 453 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 KIAA1671Q9BY89 1806 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 PPEF2O14830 753 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 CLTAP09496 248 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 MLH1P40692 756 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 FXR1P51114 621 aaKnown RBP eCLIP11.66□□□□□ -0.54
TDP1-211ENST00000555178 ADKP55263 362 aaKnown RBP11.66□□□□□ -0.54
TDP1-211ENST00000555178 FAM189BP81408 668 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 MYL7Q01449 175 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 DPY19L2P1Q6NXN4 242 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 GJB7Q6PEY0 223 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 ZNF365Q70YC5 407 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 SEPT8Q92599 483 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 SEMA4DQ92854 862 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 SNX27Q96L92 541 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 ERGIC2Q96RQ1 377 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 LSM14BQ9BX40 385 aaKnown RBP11.66□□□□□ -0.54
TDP1-211ENST00000555178 RPF1Q9H9Y2 349 aaKnown RBP11.66□□□□□ -0.54
TDP1-211ENST00000555178 TUBGCP4Q9UGJ1 667 aa11.66□□□□□ -0.54
TDP1-211ENST00000555178 AJAP1Q9UKB5 411 aaPredicted RBP11.66□□□□□ -0.54
TDP1-211ENST00000555178 A0A1W2PQC6 194 aa11.65□□□□□ -0.54
TDP1-211ENST00000555178 KIAA0391O15091 583 aaKnown RBP11.65□□□□□ -0.54
TDP1-211ENST00000555178 UPP2O95045 317 aa11.65□□□□□ -0.54
TDP1-211ENST00000555178 VNN1O95497 513 aa11.65□□□□□ -0.54
TDP1-211ENST00000555178 LDHAP00338 332 aaKnown RBP11.65□□□□□ -0.54
TDP1-211ENST00000555178 CST3P01034 146 aaPredicted RBP11.65□□□□□ -0.54
TDP1-211ENST00000555178 CASP14P31944 242 aa11.65□□□□□ -0.54
TDP1-211ENST00000555178 MCCD1P59942 119 aaPredicted RBP11.65□□□□□ -0.54
TDP1-211ENST00000555178 LRMPQ12912 555 aa11.65□□□□□ -0.54
TDP1-211ENST00000555178 TDRD10Q5VZ19 366 aaKnown RBP11.65□□□□□ -0.54
TDP1-211ENST00000555178 FAM117BQ6P1L5 589 aa11.65□□□□□ -0.54
TDP1-211ENST00000555178 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.65□□□□□ -0.542e-6■■□□□ 12.6
TDP1-211ENST00000555178 PAAF1Q9BRP4 392 aa11.65□□□□□ -0.54
TDP1-211ENST00000555178 TRAIPQ9BWF2 469 aa11.65□□□□□ -0.54
TDP1-211ENST00000555178 TTYH3Q9C0H2 523 aa11.65□□□□□ -0.54
TDP1-211ENST00000555178 MTMR12Q9C0I1 747 aa11.65□□□□□ -0.54
TDP1-211ENST00000555178 KIAA1586Q9HCI6 787 aa11.65□□□□□ -0.54
TDP1-211ENST00000555178 ITIH6Q6UXX5 1313 aa11.65□□□□□ -0.55
TDP1-211ENST00000555178 ARL5CA6NH57 179 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 F8W810 466 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 ZNF623O75123 536 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 CAPN15O75808 1086 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 NOL4O94818 638 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 POMCP01189 267 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 C4BPAP04003 597 aaKnown RBP11.64□□□□□ -0.55
TDP1-211ENST00000555178 ITGA4P13612 1032 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 TNNI1P19237 187 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 PON1P27169 355 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 MXI1P50539 228 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 SCNN1GP51170 649 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 NAB2Q15742 525 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 SLC24A5Q71RS6 500 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 SV2AQ7L0J3 742 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 CXorf38Q8TB03 319 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 HELQQ8TDG4 1101 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 TMC2Q8TDI7 906 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 TAS1R2Q8TE23 839 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 FNBP1Q96RU3 617 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 PI4K2AQ9BTU6 479 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 CCDC94Q9BW85 323 aaPredicted RBP11.64□□□□□ -0.55
TDP1-211ENST00000555178 KCNF1Q9H3M0 494 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 SIX2Q9NPC8 291 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 IL23AQ9NPF7 189 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 INPP5FQ9Y2H2 1132 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 SMIM28A0A1B0GU29 152 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 OFD1O75665 1012 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 CLDN10P78369 228 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 TFAMQ00059 246 aaKnown RBP11.64□□□□□ -0.55
TDP1-211ENST00000555178 PPP2R3AQ06190 1150 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 EXOC3L4Q17RC7 722 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 TMEM240Q5SV17 173 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 CNKSR3Q6P9H4 555 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 C15orf39Q6ZRI6 1047 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 TMEM199Q8N511 208 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 CACTINQ8WUQ7 758 aaKnown RBP11.64□□□□□ -0.55
TDP1-211ENST00000555178 CCDC51Q96ER9 411 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 CGRRF1Q99675 332 aa11.64□□□□□ -0.55
TDP1-211ENST00000555178 SIX4Q9UIU6 781 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms