RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 HSP90AA2PQ14568 343 aaPredicted RBP15.47■□□□□ 0.07
SHMT2-217ENST00000555116 PLPP4Q5VZY2 271 aa15.47■□□□□ 0.07
SHMT2-217ENST00000555116 NELFCDQ8IXH7 590 aa15.47■□□□□ 0.07
SHMT2-217ENST00000555116 MICAL1Q8TDZ2 1067 aa15.47■□□□□ 0.07
SHMT2-217ENST00000555116 TCF25Q9BQ70 676 aa15.47■□□□□ 0.07
SHMT2-217ENST00000555116 GOLGA2P5Q9HBQ8 144 aa15.47■□□□□ 0.07
SHMT2-217ENST00000555116 ENTPD7Q9NQZ7 604 aa15.47■□□□□ 0.07
SHMT2-217ENST00000555116 PRUNE2Q8WUY3 3088 aa15.47■□□□□ 0.07
SHMT2-217ENST00000555116 IGFBP6P24592 240 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-217ENST00000555116 POU5F1Q01860 360 aaKnown RBP15.46■□□□□ 0.07
SHMT2-217ENST00000555116 PPP2R3AQ06190 1150 aa15.46■□□□□ 0.07
SHMT2-217ENST00000555116 HYAL1Q12794 435 aa15.46■□□□□ 0.07
SHMT2-217ENST00000555116 KCNB1Q14721 858 aa15.46■□□□□ 0.07
SHMT2-217ENST00000555116 COL19A1Q14993 1142 aa15.46■□□□□ 0.07
SHMT2-217ENST00000555116 ZBTB6Q15916 424 aa15.46■□□□□ 0.07
SHMT2-217ENST00000555116 TMC7Q7Z402 723 aa15.46■□□□□ 0.07
SHMT2-217ENST00000555116 C18orf25Q96B23 403 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-217ENST00000555116 CCDC34Q96HJ3 373 aa15.46■□□□□ 0.07
SHMT2-217ENST00000555116 HERC2P3Q9BVR0 1158 aa15.46■□□□□ 0.07
SHMT2-217ENST00000555116 NGRNQ9NPE2 291 aaKnown RBP15.46■□□□□ 0.07
SHMT2-217ENST00000555116 SLC38A7Q9NVC3 462 aa15.46■□□□□ 0.07
SHMT2-217ENST00000555116 KIF4AO95239 1232 aa15.46■□□□□ 0.06
SHMT2-217ENST00000555116 CTSAP10619 480 aa15.46■□□□□ 0.06
SHMT2-217ENST00000555116 GTF2F1P35269 517 aaKnown RBP eCLIP15.46■□□□□ 0.06
SHMT2-217ENST00000555116 UBE2HP62256 183 aa15.46■□□□□ 0.06
SHMT2-217ENST00000555116 SPAG1Q07617 926 aa15.46■□□□□ 0.06
SHMT2-217ENST00000555116 UPP1Q16831 310 aa15.46■□□□□ 0.06
SHMT2-217ENST00000555116 ARMCX5Q6P1M9 558 aa15.46■□□□□ 0.06
SHMT2-217ENST00000555116 CD300LGQ6UXG3 332 aa15.46■□□□□ 0.06
SHMT2-217ENST00000555116 TAS1R1Q7RTX1 841 aa15.46■□□□□ 0.06
SHMT2-217ENST00000555116 SAAL1Q96ER3 474 aa15.46■□□□□ 0.06
SHMT2-217ENST00000555116 UROC1Q96N76 676 aa15.46■□□□□ 0.06
SHMT2-217ENST00000555116 PCIF1Q9H4Z3 704 aa15.46■□□□□ 0.06
SHMT2-217ENST00000555116 STK39Q9UEW8 545 aa15.46■□□□□ 0.06
SHMT2-217ENST00000555116 ADAM28Q9UKQ2 775 aa15.46■□□□□ 0.06
SHMT2-217ENST00000555116 SCN1AP35498 2009 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 HIDE1A8MVS5 230 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 TMEM189-UBE2V1I3L0A0 370 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 EXTL3O43909 919 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 SOD2P04179 222 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 CLCNKBP51801 687 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 SMC1AQ14683 1233 aaKnown RBP15.45■□□□□ 0.06
SHMT2-217ENST00000555116 SKIV2LQ15477 1246 aaKnown RBP15.45■□□□□ 0.06
SHMT2-217ENST00000555116 KNOP1Q1ED39 458 aaKnown RBP15.45■□□□□ 0.06
SHMT2-217ENST00000555116 FUT10Q6P4F1 479 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 DCLRE1AQ6PJP8 1040 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 CD302Q8IX05 232 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 ELOA2Q8IYF1 753 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-217ENST00000555116 TMEM130Q8N3G9 435 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 MRPL43Q8N983 215 aaKnown RBP15.45■□□□□ 0.06
SHMT2-217ENST00000555116 AUTS2Q8WXX7 1259 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 CCDC47Q96A33 483 aaKnown RBP15.45■□□□□ 0.06
SHMT2-217ENST00000555116 TSPAN18Q96SJ8 248 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 FAM213AQ9BRX8 229 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 GPR62Q9BZJ7 368 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 AGPAT3Q9NRZ7 376 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 TUBGCP4Q9UGJ1 667 aa15.45■□□□□ 0.06
SHMT2-217ENST00000555116 GOLGA8IPA6NC78 632 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 C2orf71A6NGG8 1288 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 GOLGA8JA6NMD2 632 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 KIAA0391O15091 583 aaKnown RBP15.44■□□□□ 0.06
SHMT2-217ENST00000555116 TADA2AO75478 443 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 CXCL14O95715 111 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 LDHAP00338 332 aaKnown RBP15.44■□□□□ 0.06
SHMT2-217ENST00000555116 SNRPFP62306 86 aaKnown RBP15.44■□□□□ 0.06
SHMT2-217ENST00000555116 JADE1Q6IE81 842 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 C3orf58Q8NDZ4 430 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 SPATA20Q8TB22 786 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 HASPINQ8TF76 798 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 FAM212AQ96EL1 285 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 KIF12Q96FN5 646 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 DDX27Q96GQ7 796 aaKnown RBP15.44■□□□□ 0.06
SHMT2-217ENST00000555116 ASB7Q9H672 318 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 TLE6Q9H808 572 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 IRAK3Q9Y616 596 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 KINO60870 393 aaKnown RBP15.44■□□□□ 0.06
SHMT2-217ENST00000555116 LILRB3O75022 631 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 RPL9P32969 192 aaKnown RBP15.44■□□□□ 0.06
SHMT2-217ENST00000555116 NRIP1P48552 1158 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 WNT7BP56706 349 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 PTPN14Q15678 1187 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 CTC1Q2NKJ3 1217 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 RBM23Q86U06 439 aaKnown RBP15.44■□□□□ 0.06
SHMT2-217ENST00000555116 BRSK2Q8IWQ3 736 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 C12orf56Q8IXR9 622 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 GPD1LQ8N335 351 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 GPT2Q8TD30 523 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 PPP2R3CQ969Q6 453 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 KCTD10Q9H3F6 313 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 CHST7Q9NS84 486 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 HSPBP1Q9NZL4 362 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 UBQLN1Q9UMX0 589 aaKnown RBP15.44■□□□□ 0.06
SHMT2-217ENST00000555116 DERAQ9Y315 318 aa15.44■□□□□ 0.06
SHMT2-217ENST00000555116 MTCL1Q9Y4B5 1905 aaKnown RBP15.43■□□□□ 0.06
SHMT2-217ENST00000555116 PLXNA3P51805 1871 aa15.43■□□□□ 0.06
SHMT2-217ENST00000555116 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-217ENST00000555116 PODXLO00592 558 aa15.43■□□□□ 0.06
SHMT2-217ENST00000555116 PER2O15055 1255 aa15.43■□□□□ 0.06
SHMT2-217ENST00000555116 CLIC2O15247 247 aa15.43■□□□□ 0.06
SHMT2-217ENST00000555116 NFICP08651 508 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms