RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 DOCK3Q8IZD9 2030 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 CEP104O60308 925 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 PAFAH1B1P43034 410 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 GPC3P51654 580 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 ARHGAP1Q07960 439 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 TTC19Q6DKK2 380 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-212ENST00000554467 TAPT1Q6NXT6 567 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 AP1M1Q9BXS5 423 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 ACBD3Q9H3P7 528 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 CPA4Q9UI42 421 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 NOCTQ9UK39 431 aaKnown RBP12.54□□□□□ -0.4
SHMT2-212ENST00000554467 A0A0B4J269 797 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 VNN1O95497 513 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 GTF2A2P52657 109 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 LLGL2Q6P1M3 1020 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 SHC3Q92529 594 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 TAF4BQ92750 862 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 LENG1Q96BZ8 264 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-212ENST00000554467 MIEF2Q96C03 454 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 SGSM3Q96HU1 749 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 VIPAS39Q9H9C1 493 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 CTTNBP2NLQ9P2B4 639 aa12.54□□□□□ -0.4
SHMT2-212ENST00000554467 ESYT3A0FGR9 886 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 H0YCG3 227 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 MSCO60682 206 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 KIF4AO95239 1232 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 PRKCBP05771 671 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 IQCF3P0C7M6 154 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 INSRRP14616 1297 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 CYP11B1P15538 503 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 LLGL1Q15334 1064 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 ZNF792Q3KQV3 632 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 NAA35Q5VZE5 725 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 KLHL7Q8IXQ5 586 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 APOBEC3GQ9HC16 384 aaKnown RBP12.53□□□□□ -0.4
SHMT2-212ENST00000554467 NMRK2Q9NPI5 230 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 MCM8Q9UJA3 840 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 ASB14A6NK59 587 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 LGR5O75473 907 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 VTNP04004 478 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 CFHP08603 1231 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 CCNA1P78396 465 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 CFAP221Q4G0U5 840 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 CCDC70Q6NSX1 233 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 GPR142Q7Z601 462 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 PASD1Q8IV76 773 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 TMEM192Q8IY95 271 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 KRT12Q99456 494 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 MAF1Q9H063 256 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 C1orf112Q9NSG2 853 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-212ENST00000554467 COQ4Q9Y3A0 265 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 EBAG9O00559 213 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 LGALS2P05162 132 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 FMO1Q01740 532 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 PSMD6Q15008 389 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 EEF1DP3Q658K8 133 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 AADACL2Q6P093 401 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 SND1Q7KZF4 910 aaKnown RBP eCLIP12.53□□□□□ -0.42e-6■■□□□ 11.8
SHMT2-212ENST00000554467 RPAINQ86UA6 219 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 FAM167AQ96KS9 214 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 SMARCAD1Q9H4L7 1026 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 GINS2Q9Y248 185 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 CAPN7Q9Y6W3 813 aa12.53□□□□□ -0.4
SHMT2-212ENST00000554467 ADCY6O43306 1168 aa12.52□□□□□ -0.4
SHMT2-212ENST00000554467 GRIN3BO60391 1043 aa12.52□□□□□ -0.4
SHMT2-212ENST00000554467 SNAI1O95863 264 aaPredicted RBP12.52□□□□□ -0.4
SHMT2-212ENST00000554467 C4BPAP04003 597 aaKnown RBP12.52□□□□□ -0.4
SHMT2-212ENST00000554467 PRLRP16471 622 aa12.52□□□□□ -0.4
SHMT2-212ENST00000554467 RFX1P22670 979 aa12.52□□□□□ -0.4
SHMT2-212ENST00000554467 COPB2P35606 906 aa12.52□□□□□ -0.4
SHMT2-212ENST00000554467 ZNF211Q13398 564 aaPredicted RBP12.52□□□□□ -0.4
SHMT2-212ENST00000554467 IER5Q5VY09 327 aa12.52□□□□□ -0.4
SHMT2-212ENST00000554467 MAMDC4Q6UXC1 1216 aa12.52□□□□□ -0.4
SHMT2-212ENST00000554467 USP37Q86T82 979 aa12.52□□□□□ -0.4
SHMT2-212ENST00000554467 C2orf69Q8N8R5 385 aa12.52□□□□□ -0.4
SHMT2-212ENST00000554467 BCAS4Q8TDM0 211 aa12.52□□□□□ -0.4
SHMT2-212ENST00000554467 RFFLQ8WZ73 363 aa12.52□□□□□ -0.4
SHMT2-212ENST00000554467 MTMR12Q9C0I1 747 aa12.52□□□□□ -0.4
SHMT2-212ENST00000554467 SCN4AP35499 1836 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 CST3P01034 146 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-212ENST00000554467 TMEM253P0C7T8 217 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 INHBEP58166 350 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 TRADDQ15628 312 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 MAPK6Q16659 721 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 ZACNQ401N2 412 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 SPRYD7Q5W111 196 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 PLPPR4Q7Z2D5 763 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 STYXL1Q9Y6J8 313 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 ADGRA2Q96PE1 1338 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 PDE6CP51160 858 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 TMEM62Q0P6H9 643 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 WDR44Q5JSH3 913 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 CST9Q5W186 159 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 C15orf39Q6ZRI6 1047 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 NT5DC3Q86UY8 548 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 RNF217Q8TC41 542 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 CPA5Q8WXQ8 436 aa12.52□□□□□ -0.41
SHMT2-212ENST00000554467 ACO2Q99798 780 aaKnown RBP12.52□□□□□ -0.41
SHMT2-212ENST00000554467 MRPL4Q9BYD3 311 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms