RNA–Protein interactions for RNA: ENST00000553846.1

PRKCH-208, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 557 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-208	ENST00000553846	PRR23B	Q6ZRT6	265 aa		10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	C4orf19	Q8IY42	314 aa		10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	FBXL16	Q8N461	479 aa		10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	SPEM1	Q8N4L4	309 aa		10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	TCEAL4	Q96EI5	215 aa		10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	MCRS1	Q96EZ8	462 aa		10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	CEP170P1	Q96L14	293 aa		10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	APOL6	Q9BWW8	343 aa		10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	RNF26	Q9BY78	433 aa	Predicted RBP	10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	AGXT2	Q9BYV1	514 aa		10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	TRPV4	Q9HBA0	871 aa		10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	ZNF334	Q9HCZ1	680 aa	Predicted RBP	10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	KLK14	Q9P0G3	267 aa		10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	NDRG2	Q9UN36	371 aa	Known RBP	10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	MRPS23	Q9Y3D9	190 aa	Known RBP	10.09	□□□□□ -0.79
PRKCH-208	ENST00000553846	BPTF	Q12830	3046 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	WDR27	A2RRH5	827 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	CASTOR2	A6NHX0	329 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	TTLL13P	A6NNM8	815 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	TADA2A	O75478	443 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	YWHAB	P31946	246 aa	Known RBP	10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	OR1D2	P34982	312 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	ARL2	P36404	184 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	RAP1GAP	P47736	663 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	CXCL12	P48061	93 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	MLLT6	P55198	1093 aa	Predicted RBP	10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	SF3A2	Q15428	464 aa	Known RBP	10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	SLC27A1	Q6PCB7	646 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846		Q6ZS52	159 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	LONP2	Q86WA8	852 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	CDR2L	Q86X02	465 aa	Predicted RBP	10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	EXOC8	Q8IYI6	725 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	DAGLB	Q8NCG7	672 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	CCDC148	Q8NFR7	591 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	TCP11	Q8WWU5	503 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	FAM3C	Q92520	227 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	HAS1	Q92839	578 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	RSPRY1	Q96DX4	576 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	DDX27	Q96GQ7	796 aa	Known RBP	10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	ZSWIM3	Q96MP5	696 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	LXN	Q9BS40	222 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	LMAN1L	Q9HAT1	526 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	SH3GLB2	Q9NR46	395 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	SH2B1	Q9NRF2	756 aa	Predicted RBP	10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	ZMIZ1	Q9ULJ6	1067 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	POLI	Q9UNA4	740 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	BACE2	Q9Y5Z0	518 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	PIAS3	Q9Y6X2	628 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	TRIP11	Q15643	1979 aa		10.08	□□□□□ -0.8
PRKCH-208	ENST00000553846	CCDC196	A0A1B0GTZ2	297 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	INO80B-WBP1	J3KQ70	363 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	ABLIM3	O94929	683 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	EPN2	O95208	641 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	NPTXR	O95502	500 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	EDN1	P05305	212 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	P4HB	P07237	508 aa	Known RBP	10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	ZNF806	P0C7X5	589 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	CPA1	P15085	419 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	IFNAR1	P17181	557 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	GLRA2	P23416	452 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	EPHA5	P54756	1037 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	MXD4	Q14582	209 aa	Predicted RBP	10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	PPP2R5D	Q14738	602 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	SLC8B1	Q6J4K2	584 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	PDXDC1	Q6P996	788 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	UNQ6494/PRO21346	Q6UXR6	183 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	WDR5B	Q86VZ2	330 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	C3orf58	Q8NDZ4	430 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	KCNB2	Q92953	911 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	TRMT61B	Q9BVS5	477 aa	Known RBP	10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	LSM14B	Q9BX40	385 aa	Known RBP	10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	BRD9	Q9H8M2	597 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	RBM12	Q9NTZ6	932 aa	Known RBP	10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	RGL1	Q9NZL6	768 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	CDY1	Q9Y6F8	540 aa		10.07	□□□□□ -0.8
PRKCH-208	ENST00000553846	KCNK5	O95279	499 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	LYPLA2	O95372	231 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	TKT	P29401	623 aa	Known RBP	10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	EVC	P57679	992 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	ROR1	Q01973	937 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	ELAVL2	Q12926	359 aa	Known RBP	10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	CCIN	Q13939	588 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	FAM187B	Q17R55	369 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	STPG1	Q5TH74	334 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	CDCA2	Q69YH5	1023 aa	Predicted RBP	10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	TXNDC11	Q6PKC3	985 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	CEP57	Q86XR8	500 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	GATA6	Q92908	595 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	SMARCD2	Q92925	531 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	IRF7	Q92985	503 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	LOXL4	Q96JB6	756 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	PPP1R10	Q96QC0	940 aa	Known RBP	10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	MTR	Q99707	1265 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	ZFP14	Q9HCL3	533 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	ANO2	Q9NQ90	1003 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	DDX25	Q9UHL0	483 aa	Known RBP	10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	PCDHA4	Q9UN74	947 aa		10.06	□□□□□ -0.8
PRKCH-208	ENST00000553846	NUP210	Q8TEM1	1887 aa	Predicted RBP	10.06	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms