RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	PIGR	P01833	764 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	GSTA1	P08263	222 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	RDX	P35241	583 aa	Known RBP	13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	ZNF280A	P59817	542 aa	Predicted RBP	13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	MKRN3	Q13064	507 aa	Known RBP	13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	NR1H3	Q13133	447 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	CCNG2	Q16589	344 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	NBPF9	Q3BBW0	867 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	TNFAIP8L3	Q5GJ75	292 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	NSMF	Q6X4W1	530 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	C15orf39	Q6ZRI6	1047 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	RELL1	Q8IUW5	271 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	EXOC8	Q8IYI6	725 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	SLC16A10	Q8TF71	515 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	PSPC1	Q8WXF1	523 aa	Known RBP	13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	RNF25	Q96BH1	459 aa	Predicted RBP	13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	CCDC114	Q96M63	670 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	RABEP2	Q9H5N1	569 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	JPH1	Q9HDC5	661 aa	Predicted RBP	13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	PDLIM7	Q9NR12	457 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	CYP26B1	Q9NR63	512 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	RNF146	Q9NTX7	359 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	ARHGAP28	Q9P2N2	729 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	SLC9A2	Q9UBY0	812 aa		13.92	□□□□□ -0.18
CPSF7-223	ENST00000544669	TLDC2	A0PJX2	215 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	TISP43	B9A030	160 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	GRIN3B	O60391	1043 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	PROSC	O94903	275 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	CYP1A1	P04798	512 aa	Predicted RBP	13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	TMOD1	P28289	359 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	TAP1	Q03518	808 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	SURF1	Q15526	300 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	UGCG	Q16739	394 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	TTC27	Q6P3X3	843 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	RIBC1	Q8N443	379 aa	Predicted RBP	13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	GBP7	Q8N8V2	638 aa	Predicted RBP	13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	SAAL1	Q96ER3	474 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	C12orf42	Q96LP6	360 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	SCLT1	Q96NL6	688 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	IMPG2	Q9BZV3	1241 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	EPB41L4B	Q9H329	900 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	GPRC5C	Q9NQ84	441 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	ASIC3	Q9UHC3	531 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	MYH11	P35749	1972 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	MYPN	Q86TC9	1320 aa		13.91	□□□□□ -0.18
CPSF7-223	ENST00000544669	ANKRD65	E5RJM6	399 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	SORBS3	O60504	671 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	ATP9A	O75110	1047 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	DLAT	P10515	647 aa	Known RBP	13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	ATF2	P15336	505 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	CHN1	P15882	459 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	DRD4	P21917	467 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	NAMPT	P43490	491 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	C1QBP	Q07021	282 aa	Known RBP	13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	CXCL9	Q07325	125 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	GRM1	Q13255	1194 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	BAAT	Q14032	418 aa	Predicted RBP	13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	SIX1	Q15475	284 aa	Predicted RBP	13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	ZACN	Q401N2	412 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	ZNF365	Q70YC5	407 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	RPAIN	Q86UA6	219 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	KATNAL2	Q8IYT4	538 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	EXD1	Q8NHP7	514 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	KAT5	Q92993	513 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	SELENOS	Q9BQE4	189 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	SEMA4A	Q9H3S1	761 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	A1CF	Q9NQ94	594 aa	Known RBP	13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	PICK1	Q9NRD5	415 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	HOMER2	Q9NSB8	354 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	ACTL7B	Q9Y614	415 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	TNNI1	P19237	187 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	HNRNPH1	P31943	449 aa	Known RBP	13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	RFC5	P40937	340 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	BACE1	P56817	501 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	KRT17	Q04695	432 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	SPP2	Q13103	211 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	LRRC38	Q5VT99	294 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	PLA2G4F	Q68DD2	849 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	PHF13	Q86YI8	300 aa	Predicted RBP	13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	RBM41	Q96IZ5	413 aa	Known RBP	13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	AZI2	Q9H6S1	392 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	TMEM134	Q9H6X4	195 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	PARVA	Q9NVD7	372 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	IP6K2	Q9UHH9	426 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	CNTN6	Q9UQ52	1028 aa		13.9	□□□□□ -0.18
CPSF7-223	ENST00000544669	SPATA31C2	B4DYI2	1134 aa		13.89	□□□□□ -0.19
CPSF7-223	ENST00000544669	TTC4	O95801	387 aa		13.89	□□□□□ -0.19
CPSF7-223	ENST00000544669	KCNA2	P16389	499 aa		13.89	□□□□□ -0.19
CPSF7-223	ENST00000544669	MARCKSL1	P49006	195 aa		13.89	□□□□□ -0.19
CPSF7-223	ENST00000544669	COPS2	P61201	443 aa		13.89	□□□□□ -0.19
CPSF7-223	ENST00000544669	STAT4	Q14765	748 aa		13.89	□□□□□ -0.19
CPSF7-223	ENST00000544669	SWSAP1	Q6NVH7	229 aa		13.89	□□□□□ -0.19
CPSF7-223	ENST00000544669	PIGW	Q7Z7B1	504 aa		13.89	□□□□□ -0.19
CPSF7-223	ENST00000544669	CDAN1	Q8IWY9	1227 aa		13.89	□□□□□ -0.19
CPSF7-223	ENST00000544669	RCOR2	Q8IZ40	523 aa		13.89	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms