RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 RMDN1Q96DB5 314 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 DDX23Q9BUQ8 820 aaKnown RBP17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 C2orf40Q9H1Z8 148 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 TMEM189-UBE2V1I3L0A0 370 aa17.03■□□□□ 0.32
CLSTN3-213ENST00000541953 UPP1Q16831 310 aa17.03■□□□□ 0.32
CLSTN3-213ENST00000541953 ATF7IP2Q5U623 682 aa17.03■□□□□ 0.32
CLSTN3-213ENST00000541953 KIAA2013Q8IYS2 634 aa17.03■□□□□ 0.32
CLSTN3-213ENST00000541953 DAW1Q8N136 415 aa17.03■□□□□ 0.32
CLSTN3-213ENST00000541953 C4orf32Q8N8J7 132 aa17.03■□□□□ 0.32
CLSTN3-213ENST00000541953 ZMAT2Q96NC0 199 aaKnown RBP17.03■□□□□ 0.32
CLSTN3-213ENST00000541953 BHMT2Q9H2M3 363 aa17.03■□□□□ 0.32
CLSTN3-213ENST00000541953 PDCD11Q14690 1871 aaKnown RBP17.03■□□□□ 0.32
CLSTN3-213ENST00000541953 PP2D1A8MPX8 630 aa17.02■□□□□ 0.32
CLSTN3-213ENST00000541953 B3GAT3O94766 335 aa17.02■□□□□ 0.32
CLSTN3-213ENST00000541953 CEBPBP17676 345 aa17.02■□□□□ 0.32
CLSTN3-213ENST00000541953 OSTNP61366 133 aa17.02■□□□□ 0.32
CLSTN3-213ENST00000541953 TRIM29Q14134 588 aa17.02■□□□□ 0.32
CLSTN3-213ENST00000541953 MLF2Q15773 248 aaPredicted RBP17.02■□□□□ 0.32
CLSTN3-213ENST00000541953 PABPC1LQ4VXU2 614 aaKnown RBP17.02■□□□□ 0.32
CLSTN3-213ENST00000541953 CCDC83Q8IWF9 413 aa17.02■□□□□ 0.32
CLSTN3-213ENST00000541953 ADPGKQ9BRR6 497 aa17.02■□□□□ 0.32
CLSTN3-213ENST00000541953 CDT1Q9H211 546 aa17.02■□□□□ 0.32
CLSTN3-213ENST00000541953 ZFP37Q9Y6Q3 630 aaPredicted RBP17.02■□□□□ 0.32
CLSTN3-213ENST00000541953 NCOR2Q9Y618 2525 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 SMIM28A0A1B0GU29 152 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 KANSL1LA0AUZ9 987 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 WDR27A2RRH5 827 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 ABLIM1O14639 778 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 POU2F2P09086 479 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 CCT6AP40227 531 aaKnown RBP17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 ROR1Q01973 937 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 DCAF4L1Q3SXM0 396 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 SLC44A4Q53GD3 710 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 TTC38Q5R3I4 469 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 SUMF1Q8NBK3 374 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 TCEAL4Q96EI5 215 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 MCRS1Q96EZ8 462 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 PTPRHQ9HD43 1115 aa17.01■□□□□ 0.31
CLSTN3-213ENST00000541953 NCANO14594 1321 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 MED19A0JLT2 244 aaPredicted RBP17■□□□□ 0.31
CLSTN3-213ENST00000541953 E9PMD0 336 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 CITO14578 2027 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 XYLBO75191 536 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 RHOP08100 348 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 FCARP24071 287 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 TARSP26639 723 aaKnown RBP17■□□□□ 0.31
CLSTN3-213ENST00000541953 CCR2P41597 374 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 RBM25P49756 843 aaKnown RBP17■□□□□ 0.31
CLSTN3-213ENST00000541953 ELAVL2Q12926 359 aaKnown RBP17■□□□□ 0.31
CLSTN3-213ENST00000541953 MAPK7Q13164 816 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 UBXN2BQ14CS0 331 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 IL17AQ16552 155 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 ALKAL1Q6UXT8 129 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 KCNK18Q7Z418 384 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 C18orf25Q96B23 403 aaPredicted RBP17■□□□□ 0.31
CLSTN3-213ENST00000541953 C8orf76Q96K31 380 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 RUSC1Q9BVN2 902 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 LTB4R2Q9NPC1 389 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 KIAA1024Q9UPX6 916 aa17■□□□□ 0.31
CLSTN3-213ENST00000541953 TBC1D4O60343 1298 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 SEC24AO95486 1093 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 CDC25AP30304 524 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 NPTX2P47972 431 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 TOB1P50616 345 aaPredicted RBP16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 FXR2P51116 673 aaKnown RBP eCLIP16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 PEX3P56589 373 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 FOXK2Q01167 660 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 XKR4Q5GH76 650 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 VARS2Q5ST30 1063 aaKnown RBP16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 TANGO2Q6ICL3 276 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 MTSS1LQ765P7 747 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 ERMP1Q7Z2K6 904 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 ERMNQ8TAM6 284 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 ACO2Q99798 780 aaKnown RBP16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 TARS2Q9BW92 718 aaKnown RBP16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 DDX19AQ9NUU7 478 aaKnown RBP16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 TNFSF13BQ9Y275 285 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 MRPS23Q9Y3D9 190 aaKnown RBP16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 BACE2Q9Y5Z0 518 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 TICRRQ7Z2Z1 1910 aa16.99■□□□□ 0.31
CLSTN3-213ENST00000541953 FAM170BA6NMN3 283 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 GRM5P41594 1212 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 FZD5Q13467 585 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 PPP2R5AQ15172 486 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 UVSSAQ2YD98 709 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 SEZ6Q53EL9 994 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 PRSS36Q5K4E3 855 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 SLC8B1Q6J4K2 584 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 TSSK4Q6SA08 328 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 TPRG1Q6ZUI0 275 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 ZBTB45Q96K62 511 aaPredicted RBP16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 IFT74Q96LB3 600 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 FOXP1Q9H334 677 aaPredicted RBP16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 SEMA4AQ9H3S1 761 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 HEBP1Q9NRV9 189 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 SPATA6Q9NWH7 488 aaPredicted RBP16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 PCDHB6Q9Y5E3 794 aa16.98■□□□□ 0.31
CLSTN3-213ENST00000541953 PHLPP2Q6ZVD8 1323 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 CCDC169A6NNP5 214 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 PODXLO00592 558 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms