RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 ZBTB6Q15916 424 aa20.38■□□□□ 0.85
VPS33A-205ENST00000541169 SNRNP35Q16560 246 aaKnown RBP20.38■□□□□ 0.85
VPS33A-205ENST00000541169 SEZ6Q53EL9 994 aa20.38■□□□□ 0.85
VPS33A-205ENST00000541169 CENPPQ6IPU0 288 aa20.38■□□□□ 0.85
VPS33A-205ENST00000541169 DDX53Q86TM3 631 aaKnown RBP20.38■□□□□ 0.85
VPS33A-205ENST00000541169 MLKLQ8NB16 471 aa20.38■□□□□ 0.85
VPS33A-205ENST00000541169 BEST2Q8NFU1 509 aa20.38■□□□□ 0.85
VPS33A-205ENST00000541169 PPP2R3CQ969Q6 453 aa20.38■□□□□ 0.85
VPS33A-205ENST00000541169 MRPL38Q96DV4 380 aaKnown RBP20.38■□□□□ 0.85
VPS33A-205ENST00000541169 KIF12Q96FN5 646 aa20.38■□□□□ 0.85
VPS33A-205ENST00000541169 PCIF1Q9H4Z3 704 aa20.38■□□□□ 0.85
VPS33A-205ENST00000541169 CERS4Q9HA82 394 aa20.38■□□□□ 0.85
VPS33A-205ENST00000541169 DMAC2Q9NW81 257 aa20.38■□□□□ 0.85
VPS33A-205ENST00000541169 DNAJB4Q9UDY4 337 aa20.38■□□□□ 0.85
VPS33A-205ENST00000541169 SSX2IPQ9Y2D8 614 aa20.38■□□□□ 0.85
VPS33A-205ENST00000541169 PDCD11Q14690 1871 aaKnown RBP20.37■□□□□ 0.85
VPS33A-205ENST00000541169 FSD2A1L4K1 749 aa20.37■□□□□ 0.85
VPS33A-205ENST00000541169 TRAPPC3O43617 180 aa20.37■□□□□ 0.85
VPS33A-205ENST00000541169 NR3C1P04150 777 aa20.37■□□□□ 0.85
VPS33A-205ENST00000541169 ITGB1P05556 798 aa20.37■□□□□ 0.85
VPS33A-205ENST00000541169 TMEM132DQ14C87 1099 aa20.37■□□□□ 0.85
VPS33A-205ENST00000541169 CT47A1Q5JQC4 288 aaPredicted RBP20.37■□□□□ 0.85
VPS33A-205ENST00000541169 DCLRE1AQ6PJP8 1040 aa20.37■□□□□ 0.85
VPS33A-205ENST00000541169 GPR65Q8IYL9 337 aa20.37■□□□□ 0.85
VPS33A-205ENST00000541169 SPPL3Q8TCT6 385 aa20.37■□□□□ 0.85
VPS33A-205ENST00000541169 GPT2Q8TD30 523 aa20.37■□□□□ 0.85
VPS33A-205ENST00000541169 SAAL1Q96ER3 474 aa20.37■□□□□ 0.85
VPS33A-205ENST00000541169 CDX2Q99626 313 aaPredicted RBP20.37■□□□□ 0.85
VPS33A-205ENST00000541169 IKZF4Q9H2S9 585 aa20.37■□□□□ 0.85
VPS33A-205ENST00000541169 DACH1Q9UI36 760 aa20.37■□□□□ 0.85
VPS33A-205ENST00000541169 MAPK8IP1Q9UQF2 711 aa20.37■□□□□ 0.85
VPS33A-205ENST00000541169 TRIP11Q15643 1979 aa20.36■□□□□ 0.85
VPS33A-205ENST00000541169 CLIC2O15247 247 aa20.36■□□□□ 0.85
VPS33A-205ENST00000541169 CYP2J2P51589 502 aa20.36■□□□□ 0.85
VPS33A-205ENST00000541169 ZCWPW2Q504Y3 356 aa20.36■□□□□ 0.85
VPS33A-205ENST00000541169 TIGD5Q53EQ6 642 aa20.36■□□□□ 0.85
VPS33A-205ENST00000541169 ZBTB41Q5SVQ8 909 aa20.36■□□□□ 0.85
VPS33A-205ENST00000541169 SPATA1Q5VX52 437 aa20.36■□□□□ 0.85
VPS33A-205ENST00000541169 Q7L0L9 218 aa20.36■□□□□ 0.85
VPS33A-205ENST00000541169 ERCC4Q92889 916 aaPredicted RBP20.36■□□□□ 0.85
VPS33A-205ENST00000541169 FAM212AQ96EL1 285 aa20.36■□□□□ 0.85
VPS33A-205ENST00000541169 FAM161BQ96MY7 647 aa20.36■□□□□ 0.85
VPS33A-205ENST00000541169 NGRNQ9NPE2 291 aaKnown RBP20.36■□□□□ 0.85
VPS33A-205ENST00000541169 TLR9Q9NR96 1032 aa20.36■□□□□ 0.85
VPS33A-205ENST00000541169 ADAM28Q9UKQ2 775 aa20.36■□□□□ 0.85
VPS33A-205ENST00000541169 SF3B1O75533 1304 aaKnown RBP eCLIP20.35■□□□□ 0.85
VPS33A-205ENST00000541169 LPXNO60711 386 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 TADA2AO75478 443 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 NR2F2P24468 414 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 CCNE1P24864 410 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 LRPAP1P30533 357 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 AP3M2P53677 418 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 FKBP3Q00688 224 aaKnown RBP20.35■□□□□ 0.85
VPS33A-205ENST00000541169 PSMD6Q15008 389 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 UPP1Q16831 310 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 SKOR2Q2VWA4 1001 aaPredicted RBP20.35■□□□□ 0.85
VPS33A-205ENST00000541169 GLRA4Q5JXX5 417 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 CCDC183Q5T5S1 534 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 GDPD5Q8WTR4 605 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 ZMAT2Q96NC0 199 aaKnown RBP20.35■□□□□ 0.85
VPS33A-205ENST00000541169 FNBP1Q96RU3 617 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 MKNK1Q9BUB5 465 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 HCSTQ9UBK5 93 aa20.35■□□□□ 0.85
VPS33A-205ENST00000541169 ARHGEF37A1IGU5 675 aa20.34■□□□□ 0.85
VPS33A-205ENST00000541169 GOLGA8IPA6NC78 632 aa20.34■□□□□ 0.85
VPS33A-205ENST00000541169 GOLGA8JA6NMD2 632 aa20.34■□□□□ 0.85
VPS33A-205ENST00000541169 CETN3O15182 167 aa20.34■□□□□ 0.85
VPS33A-205ENST00000541169 FOSL2P15408 326 aa20.34■□□□□ 0.85
VPS33A-205ENST00000541169 ADAM9Q13443 819 aa20.34■□□□□ 0.85
VPS33A-205ENST00000541169 JADE1Q6IE81 842 aa20.34■□□□□ 0.85
VPS33A-205ENST00000541169 PDXDC1Q6P996 788 aa20.34■□□□□ 0.85
VPS33A-205ENST00000541169 RBM43Q6ZSC3 357 aaKnown RBP20.34■□□□□ 0.85
VPS33A-205ENST00000541169 WDR49Q8IV35 697 aa20.34■□□□□ 0.85
VPS33A-205ENST00000541169 SMYD4Q8IYR2 804 aaPredicted RBP20.34■□□□□ 0.85
VPS33A-205ENST00000541169 NOC3LQ8WTT2 800 aaKnown RBP20.34■□□□□ 0.85
VPS33A-205ENST00000541169 POF1BQ8WVV4 589 aa20.34■□□□□ 0.85
VPS33A-205ENST00000541169 MFSD14AQ96MC6 490 aa20.34■□□□□ 0.85
VPS33A-205ENST00000541169 GUCD1Q96NT3 240 aa20.34■□□□□ 0.85
VPS33A-205ENST00000541169 ALG13Q9NP73 1137 aaKnown RBP20.34■□□□□ 0.85
VPS33A-205ENST00000541169 COL4A4P53420 1690 aaPredicted RBP20.33■□□□□ 0.85
VPS33A-205ENST00000541169 EPOPA6NHQ4 379 aa20.33■□□□□ 0.85
VPS33A-205ENST00000541169 CASTOR2A6NHX0 329 aa20.33■□□□□ 0.85
VPS33A-205ENST00000541169 BIN1O00499 593 aa20.33■□□□□ 0.85
VPS33A-205ENST00000541169 GRM6O15303 877 aa20.33■□□□□ 0.85
VPS33A-205ENST00000541169 MEFVO15553 781 aaPredicted RBP20.33■□□□□ 0.85
VPS33A-205ENST00000541169 NCK2O43639 380 aa20.33■□□□□ 0.85
VPS33A-205ENST00000541169 B3GAT3O94766 335 aa20.33■□□□□ 0.85
VPS33A-205ENST00000541169 FGFR1OPO95684 399 aaKnown RBP20.33■□□□□ 0.85
VPS33A-205ENST00000541169 PSMC2P35998 433 aaKnown RBP20.33■□□□□ 0.85
VPS33A-205ENST00000541169 PNPLA4P41247 253 aa20.33■□□□□ 0.85
VPS33A-205ENST00000541169 CREMQ03060 361 aa20.33■□□□□ 0.85
VPS33A-205ENST00000541169 CYP24A1Q07973 514 aa20.33■□□□□ 0.85
VPS33A-205ENST00000541169 DUOXA2Q1HG44 320 aa20.33■□□□□ 0.85
VPS33A-205ENST00000541169 INTS8Q75QN2 995 aaKnown RBP20.33■□□□□ 0.85
VPS33A-205ENST00000541169 CBWD2Q8IUF1 395 aa20.33■□□□□ 0.85
VPS33A-205ENST00000541169 ITGA11Q9UKX5 1188 aa20.33■□□□□ 0.85
VPS33A-205ENST00000541169 STXBP5LQ9Y2K9 1186 aa20.33■□□□□ 0.85
VPS33A-205ENST00000541169 PRG3Q9Y2Y8 225 aaPredicted RBP20.33■□□□□ 0.85
VPS33A-205ENST00000541169 R3HCC1Q9Y3T6 440 aaKnown RBP20.33■□□□□ 0.85
VPS33A-205ENST00000541169 IRAK3Q9Y616 596 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms