RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 EFHBQ8N7U6 833 aa10.06□□□□□ -0.8
SNHG1-215ENST00000540904 POMGNT1Q8WZA1 660 aa10.06□□□□□ -0.8
SNHG1-215ENST00000540904 C18orf25Q96B23 403 aaPredicted RBP10.06□□□□□ -0.8
SNHG1-215ENST00000540904 FAM212AQ96EL1 285 aa10.06□□□□□ -0.8
SNHG1-215ENST00000540904 CDCA3Q99618 268 aaPredicted RBP10.06□□□□□ -0.8
SNHG1-215ENST00000540904 GPR62Q9BZJ7 368 aa10.06□□□□□ -0.8
SNHG1-215ENST00000540904 TMEM206Q9H813 350 aa10.06□□□□□ -0.8
SNHG1-215ENST00000540904 RPF1Q9H9Y2 349 aaKnown RBP10.06□□□□□ -0.8
SNHG1-215ENST00000540904 PLEKHA5Q9HAU0 1116 aa10.06□□□□□ -0.8
SNHG1-215ENST00000540904 SLC38A7Q9NVC3 462 aa10.06□□□□□ -0.8
SNHG1-215ENST00000540904 CNTN3Q9P232 1028 aa10.06□□□□□ -0.8
SNHG1-215ENST00000540904 AGO2Q9UKV8 859 aaKnown RBP10.06□□□□□ -0.8
SNHG1-215ENST00000540904 SF3B1O75533 1304 aaKnown RBP eCLIP10.06□□□□□ -0.8
SNHG1-215ENST00000540904 PLXNA4Q9HCM2 1894 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 PVALEFA0A1B0GWK0 134 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 TTC26A0AVF1 554 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 LACTBL1A8MY62 500 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 TBX10O75333 385 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 ZNF202O95125 648 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 GLP2RO95838 553 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 SOD2P04179 222 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 URODP06132 367 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 ADSSP30520 456 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 LTBRP36941 435 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 CLCNKBP51801 687 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 PPP2R3AQ06190 1150 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 SOX4Q06945 474 aaPredicted RBP10.05□□□□□ -0.8
SNHG1-215ENST00000540904 ADAM15Q13444 863 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 POSTNQ15063 836 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 PTPN14Q15678 1187 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 CLUL1Q15846 466 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 UPP1Q16831 310 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 TJAP1Q5JTD0 557 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 LLGL2Q6P1M3 1020 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 FUT10Q6P4F1 479 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 CEP57Q86XR8 500 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 KIF12Q96FN5 646 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 B3GALT6Q96L58 329 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 UROC1Q96N76 676 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 HERC2P3Q9BVR0 1158 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 SLC39A2Q9NP94 309 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 MRPL17Q9NRX2 175 aaKnown RBP10.05□□□□□ -0.8
SNHG1-215ENST00000540904 EXOC1Q9NV70 894 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 CHMP5Q9NZZ3 219 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 CPSF3Q9UKF6 684 aaKnown RBP10.05□□□□□ -0.8
SNHG1-215ENST00000540904 BARX2Q9UMQ3 279 aaPredicted RBP10.05□□□□□ -0.8
SNHG1-215ENST00000540904 STYXL1Q9Y6J8 313 aa10.05□□□□□ -0.8
SNHG1-215ENST00000540904 FSD2A1L4K1 749 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 PODXLO00592 558 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 EIF3DO15371 548 aaKnown RBP eCLIP10.04□□□□□ -0.8
SNHG1-215ENST00000540904 CLASP2O75122 1294 aaKnown RBP10.04□□□□□ -0.8
SNHG1-215ENST00000540904 IGFBP6P24592 240 aaPredicted RBP10.04□□□□□ -0.8
SNHG1-215ENST00000540904 GLUD2P49448 558 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 EHHADHQ08426 723 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 USP41Q3LFD5 358 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 LEXMQ3ZCV2 418 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 KMT5BQ4FZB7 885 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 FAM171A1Q5VUB5 890 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 ARMCX5Q6P1M9 558 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 DCLRE1AQ6PJP8 1040 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 KRBA2Q6ZNG9 492 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 NELFCDQ8IXH7 590 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 RNF168Q8IYW5 571 aaPredicted RBP10.04□□□□□ -0.8
SNHG1-215ENST00000540904 VN1R2Q8NFZ6 395 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.04□□□□□ -0.8
SNHG1-215ENST00000540904 NOC3LQ8WTT2 800 aaKnown RBP10.04□□□□□ -0.8
SNHG1-215ENST00000540904 SAAL1Q96ER3 474 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 DDX27Q96GQ7 796 aaKnown RBP10.04□□□□□ -0.8
SNHG1-215ENST00000540904 CBWD1Q9BRT8 395 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 FAM213AQ9BRX8 229 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 EMILIN2Q9BXX0 1053 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 PCIF1Q9H4Z3 704 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 TUBGCP4Q9UGJ1 667 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 IRAK3Q9Y616 596 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 MYH11P35749 1972 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 REV3LO60673 3130 aa10.04□□□□□ -0.8
SNHG1-215ENST00000540904 MYO7AQ13402 2215 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 GOLGA8IPA6NC78 632 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 GOLGA8JA6NMD2 632 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 TMEM189-UBE2V1I3L0A0 370 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 KLRC4O43908 158 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 LILRB3O75022 631 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 EFEMP2O95967 443 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 RPN1P04843 607 aaKnown RBP10.03□□□□□ -0.8
SNHG1-215ENST00000540904 MYL1P05976 194 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 NFICP08651 508 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 CNPP09543 421 aaKnown RBP10.03□□□□□ -0.8
SNHG1-215ENST00000540904 SRGAP2BP0DMP2 458 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 BMP1P13497 986 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 GARTP22102 1010 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 KLRC2P26717 231 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 RPL9P32969 192 aaKnown RBP10.03□□□□□ -0.8
SNHG1-215ENST00000540904 HOXD13P35453 343 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 DSG1Q02413 1049 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 ELAVL2Q12926 359 aaKnown RBP10.03□□□□□ -0.8
SNHG1-215ENST00000540904 KIAA0319Q5VV43 1072 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 JADE1Q6IE81 842 aa10.03□□□□□ -0.8
SNHG1-215ENST00000540904 PTCRAQ6ISU1 281 aaPredicted RBP10.03□□□□□ -0.8
SNHG1-215ENST00000540904 CRELD2Q6UXH1 353 aaPredicted RBP10.03□□□□□ -0.8
SNHG1-215ENST00000540904 EPM2AIP1Q7L775 607 aaPredicted RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms