RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CUL1Q13616 776 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 TTLL12Q14166 644 aaPredicted RBP18.09■□□□□ 0.49
USP28-208ENST00000540438 NFIL3Q16649 462 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 RHOT2Q8IXI1 618 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 REPS2Q8NFH8 660 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 NUB1Q9Y5A7 615 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 TNFRSF8P28908 595 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 SFNP31947 248 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 RPL7AP62424 266 aaKnown RBP18.09■□□□□ 0.49
USP28-208ENST00000540438 STRN3Q13033 797 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 ZDHHC24Q6UX98 284 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 ABHD15Q6UXT9 468 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 TAX1BP1Q86VP1 789 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 DDX1Q92499 740 aaKnown RBP18.09■□□□□ 0.49
USP28-208ENST00000540438 INTUQ9ULD6 942 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 VNN1O95497 513 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 ZNF280AP59817 542 aaPredicted RBP18.09■□□□□ 0.49
USP28-208ENST00000540438 LONRF1Q17RB8 773 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 FBXW10Q5XX13 1052 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 LRRC45Q96CN5 670 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 KLRG1Q96E93 195 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 CALR3Q96L12 384 aaKnown RBP18.09■□□□□ 0.49
USP28-208ENST00000540438 TJP2Q9UDY2 1190 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 TTC7AQ9ULT0 858 aaPredicted RBP18.09■□□□□ 0.49
USP28-208ENST00000540438 POLR2AP24928 1970 aaKnown RBP18.08■□□□□ 0.49
USP28-208ENST00000540438 THAP12O43422 761 aa18.08■□□□□ 0.49
USP28-208ENST00000540438 CHKAP35790 457 aa18.08■□□□□ 0.49
USP28-208ENST00000540438 VGLL4Q14135 290 aa18.08■□□□□ 0.49
USP28-208ENST00000540438 NLRP4Q96MN2 994 aa18.08■□□□□ 0.49
USP28-208ENST00000540438 CCT8L2Q96SF2 557 aa18.08■□□□□ 0.49
USP28-208ENST00000540438 RASSF4Q9H2L5 321 aa18.08■□□□□ 0.49
USP28-208ENST00000540438 ANKEF1Q9NU02 776 aa18.08■□□□□ 0.49
USP28-208ENST00000540438 SAE1Q9UBE0 346 aaPredicted RBP18.08■□□□□ 0.49
USP28-208ENST00000540438 NXF1Q9UBU9 619 aaKnown RBP18.08■□□□□ 0.49
USP28-208ENST00000540438 TULP2O00295 520 aa18.08■□□□□ 0.48
USP28-208ENST00000540438 SHOX2O60902 331 aaPredicted RBP18.08■□□□□ 0.48
USP28-208ENST00000540438 DGAT1O75907 488 aa18.08■□□□□ 0.48
USP28-208ENST00000540438 HMGB2P26583 209 aaKnown RBP18.08■□□□□ 0.48
USP28-208ENST00000540438 MDH1P40925 334 aaKnown RBP18.08■□□□□ 0.48
USP28-208ENST00000540438 TAS2R40P59535 323 aa18.08■□□□□ 0.48
USP28-208ENST00000540438 HSDL1Q3SXM5 330 aa18.08■□□□□ 0.48
USP28-208ENST00000540438 SGO2Q562F6 1265 aa18.08■□□□□ 0.48
USP28-208ENST00000540438 BRDTQ58F21 947 aaPredicted RBP18.08■□□□□ 0.48
USP28-208ENST00000540438 CYP4A22Q5TCH4 519 aa18.08■□□□□ 0.48
USP28-208ENST00000540438 DUPD1Q68J44 220 aa18.08■□□□□ 0.48
USP28-208ENST00000540438 CRELD2Q6UXH1 353 aaPredicted RBP18.08■□□□□ 0.48
USP28-208ENST00000540438 SLC13A5Q86YT5 568 aaPredicted RBP18.08■□□□□ 0.48
USP28-208ENST00000540438 MTMR12Q9C0I1 747 aa18.08■□□□□ 0.48
USP28-208ENST00000540438 SLITRK6Q9H5Y7 841 aa18.08■□□□□ 0.48
USP28-208ENST00000540438 RAP1GAPP47736 663 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 PMS2P54278 862 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 TFAMQ00059 246 aaKnown RBP18.07■□□□□ 0.48
USP28-208ENST00000540438 WDR44Q5JSH3 913 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 DCAF15Q66K64 600 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 CATSPERGQ6ZRH7 1159 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 PRPF31Q8WWY3 499 aaKnown RBP18.07■□□□□ 0.48
USP28-208ENST00000540438 KIFAP3Q92845 792 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 GRHL1Q9NZI5 618 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 GINS2Q9Y248 185 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 B4GALT5O43286 388 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 ARIH2O95376 493 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 GGPS1O95749 300 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 KRT19P08727 400 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 ZSCAN5DPP0CG00 497 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 ETS1P14921 441 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 MUTP22033 750 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 UBA1P22314 1058 aaKnown RBP18.07■□□□□ 0.48
USP28-208ENST00000540438 BRD2P25440 801 aaKnown RBP18.07■□□□□ 0.48
USP28-208ENST00000540438 PTGIRP43119 386 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 TXNRD3NBQ6F5E7 133 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 NIPA1Q7RTP0 329 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 TMEM192Q8IY95 271 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 SLC7A3Q8WY07 619 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 EPB41L4BQ9H329 900 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 ZDHHC18Q9NUE0 388 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 FER1L6Q2WGJ9 1857 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 SUPT20HL2P0C7V6 817 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 RALAP11233 206 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 ATF7P17544 494 aaPredicted RBP18.07■□□□□ 0.48
USP28-208ENST00000540438 NSFP46459 744 aaKnown RBP18.07■□□□□ 0.48
USP28-208ENST00000540438 DYNLT1P63172 113 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 SUPT20HL1Q3ZLR7 823 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 CEP89Q96ST8 783 aa18.07■□□□□ 0.48
USP28-208ENST00000540438 MROH7Q68CQ1 1323 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 IRF6O14896 467 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 LYPLA2O95372 231 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 STXBP2Q15833 593 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 PTGISQ16647 500 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 SPRED3Q2MJR0 410 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 ACAD10Q6JQN1 1059 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 MIS18BP1Q6P0N0 1132 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 PACS2Q86VP3 889 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 GLIS1Q8NBF1 620 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 LRRN4Q8WUT4 740 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 COL2A1P02458 1487 aaPredicted RBP18.06■□□□□ 0.48
USP28-208ENST00000540438 GOLGA8SH3BPF8 625 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 PHF2O75151 1096 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 TCF7P36402 384 aaPredicted RBP18.06■□□□□ 0.48
USP28-208ENST00000540438 COILP38432 576 aaPredicted RBP18.06■□□□□ 0.48
USP28-208ENST00000540438 GPC3P51654 580 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms