RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 GFPT2O94808 682 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 LDHAP00338 332 aaKnown RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 ASNSP08243 561 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 MCF2P10911 925 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 PRLRP16471 622 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 ECE1P42892 770 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 BNC1Q01954 994 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 CBX3Q13185 183 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 MEA1Q16626 185 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 NFIL3Q16649 462 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 NEK10Q6ZWH5 1172 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 ZNF507Q8TCN5 953 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 DDX18Q9NVP1 670 aaKnown RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 GID8Q9NWU2 228 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 GALNT8Q9NY28 637 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 ZMYND8Q9ULU4 1186 aaPredicted RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 AP4S1Q9Y587 144 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 HNRNPCL2B2RXH8 293 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 USP17L10C9JJH3 530 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 PGRMC1O00264 195 aaKnown RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 DAB1O75553 588 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 MOCS3O95396 460 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 POLR2MP0CAP2 368 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 TRPC1P48995 793 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 SNRPFP62306 86 aaKnown RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 KDM7AQ6ZMT4 941 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 LARGE2Q8N3Y3 721 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 RIBC1Q8N443 379 aaPredicted RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 TNIP2Q8NFZ5 429 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 CAMKK2Q96RR4 588 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 CENPOQ9BU64 300 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 KRT6AP02538 564 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 KRT6BP04259 564 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 MSL3P1P0C860 447 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 RPA1P27694 616 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 ZNF76P36508 570 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 GCLCP48506 637 aaPredicted RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 RALGDSQ12967 914 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 BZW1Q7L1Q6 419 aaKnown RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 RRAGAQ7L523 313 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 RASSF3Q86WH2 238 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 GATAD2AQ86YP4 633 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 PHC3Q8NDX5 983 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 SEPT8Q92599 483 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 COA7Q96BR5 231 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 ABHD8Q96I13 439 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 NLRC4Q9NPP4 1024 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 EHD2Q9NZN4 543 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 TXNDC16Q9P2K2 825 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 KIF13BQ9NQT8 1826 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 SIPA1L1O43166 1804 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 EME2A4GXA9 379 aaPredicted RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 PRR23AA6NEV1 266 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 WNT7AO00755 349 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 CCDC22O60826 627 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 TBCAO75347 108 aaKnown RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 TTC4O95801 387 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 NDUFB10O96000 172 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 GYPCP04921 128 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 DEFA1P59665 94 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 DEFA3P59666 94 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 XIAPP98170 497 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 GHRHRQ02643 423 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 MYBPC2Q14324 1141 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 CYTH1Q15438 398 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 TTC16Q8NEE8 873 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 POP5Q969H6 163 aaKnown RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 ZFRQ96KR1 1074 aaKnown RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 PNMA5Q96PV4 448 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 MMTAG2Q9BU76 263 aaKnown RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 PITPNM3Q9BZ71 974 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 DDX20Q9UHI6 824 aaKnown RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 GDAQ9Y2T3 454 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 COL4A3BPQ9Y5P4 624 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 LOXHD1Q8IVV2 1947 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 LTBP3Q9NS15 1303 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 WBP4O75554 376 aaKnown RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 AARSP49588 968 aaKnown RBP eCLIP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 KPNA2P52292 529 aaKnown RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 CACNA2D1P54289 1103 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 PLTPP55058 493 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 EVX2Q03828 476 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 WASHC2DQ5SRD0 308 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 ATAD3BQ5T9A4 648 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 ATG16L1Q676U5 607 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 LRRC8BQ6P9F7 803 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 POTEAQ6S8J7 498 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 SYDE1Q6ZW31 735 aaPredicted RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 ALKBH8Q96BT7 664 aaKnown RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 FAM161BQ96MY7 647 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 DMAP1Q9NPF5 467 aaPredicted RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 BLOC1S4Q9NUP1 217 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 BTBD7Q9P203 1132 aa6.41□□□□□ -1.38
PTPRD-214ENST00000540109 ZNF70Q9UC06 446 aaPredicted RBP6.41□□□□□ -1.38
PTPRD-214ENST00000540109 RBM47A0AV96 593 aaKnown RBP6.4□□□□□ -1.38
PTPRD-214ENST00000540109 CCT8L1PA6NM43 557 aa6.4□□□□□ -1.38
PTPRD-214ENST00000540109 VHLP40337 213 aa6.4□□□□□ -1.38
PTPRD-214ENST00000540109 MAP3K10Q02779 954 aa6.4□□□□□ -1.38
PTPRD-214ENST00000540109 RASSF7Q02833 373 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms