RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 CHMP6Q96FZ7 201 aa10.64□□□□□ -0.71
TRAF1-202ENST00000540010 CLMNQ96JQ2 1002 aa10.64□□□□□ -0.71
TRAF1-202ENST00000540010 RNPC3Q96LT9 517 aaKnown RBP10.64□□□□□ -0.71
TRAF1-202ENST00000540010 CELF4Q9BZC1 486 aaKnown RBP10.64□□□□□ -0.71
TRAF1-202ENST00000540010 COX16Q9P0S2 106 aa10.64□□□□□ -0.71
TRAF1-202ENST00000540010 UBE4BO95155 1302 aa10.64□□□□□ -0.71
TRAF1-202ENST00000540010 TGFB1I1O43294 461 aa10.64□□□□□ -0.71
TRAF1-202ENST00000540010 RAD51CO43502 376 aa10.64□□□□□ -0.71
TRAF1-202ENST00000540010 EPHX2P34913 555 aa10.64□□□□□ -0.71
TRAF1-202ENST00000540010 SERPINB6P35237 376 aa10.64□□□□□ -0.71
TRAF1-202ENST00000540010 YARSP54577 528 aaKnown RBP10.64□□□□□ -0.71
TRAF1-202ENST00000540010 TPD52P55327 224 aaPredicted RBP10.64□□□□□ -0.71
TRAF1-202ENST00000540010 OSTNP61366 133 aa10.64□□□□□ -0.71
TRAF1-202ENST00000540010 C1orf54Q8WWF1 131 aa10.64□□□□□ -0.71
TRAF1-202ENST00000540010 DDX23Q9BUQ8 820 aaKnown RBP10.64□□□□□ -0.71
TRAF1-202ENST00000540010 ANKZF1Q9H8Y5 726 aa10.64□□□□□ -0.71
TRAF1-202ENST00000540010 CHORDC1Q9UHD1 332 aaPredicted RBP10.64□□□□□ -0.71
TRAF1-202ENST00000540010 MAGED2Q9UNF1 606 aaPredicted RBP10.64□□□□□ -0.71
TRAF1-202ENST00000540010 TRPC6Q9Y210 931 aa10.64□□□□□ -0.71
TRAF1-202ENST00000540010 COPB2P35606 906 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 MSH2P43246 934 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 POLE2P56282 527 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 BPIFB4P59827 614 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 CCDC137Q6PK04 289 aaKnown RBP10.63□□□□□ -0.71
TRAF1-202ENST00000540010 RNF25Q96BH1 459 aaPredicted RBP10.63□□□□□ -0.71
TRAF1-202ENST00000540010 ANKEF1Q9NU02 776 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 PSD3Q9NYI0 1048 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 DCTN4Q9UJW0 460 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 KRT1P04264 644 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 OSBPP22059 807 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 HOXD13P35453 343 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 ACTR2P61160 394 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 KCTD2Q14681 263 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 NXNQ6DKJ4 435 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 CDCA5Q96FF9 252 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 TRIM6Q9C030 488 aaPredicted RBP10.63□□□□□ -0.71
TRAF1-202ENST00000540010 EPN3Q9H201 632 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 ETNK1Q9HBU6 452 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 SAYSD1Q9NPB0 183 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 REXO2Q9Y3B8 237 aaKnown RBP10.63□□□□□ -0.71
TRAF1-202ENST00000540010 USH1CQ9Y6N9 552 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 ZRANB2O95218 330 aaKnown RBP eCLIP10.63□□□□□ -0.71
TRAF1-202ENST00000540010 UCHL3P15374 230 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 MARSP56192 900 aaKnown RBP10.63□□□□□ -0.71
TRAF1-202ENST00000540010 SLC8A3P57103 927 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 GPC5P78333 572 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 CDK17Q00537 523 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 RPUSD2Q8IZ73 545 aaKnown RBP10.63□□□□□ -0.71
TRAF1-202ENST00000540010 HIPK4Q8NE63 616 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 RDM1Q8NG50 284 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 CYTH2Q99418 400 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 HAUS2Q9NVX0 235 aa10.63□□□□□ -0.71
TRAF1-202ENST00000540010 NOP53Q9NZM5 478 aaKnown RBP10.63□□□□□ -0.71
TRAF1-202ENST00000540010 DENND3A2RUS2 1198 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 POLR2BP30876 1174 aaKnown RBP10.62□□□□□ -0.71
TRAF1-202ENST00000540010 GALCP54803 685 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 TFAMQ00059 246 aaKnown RBP10.62□□□□□ -0.71
TRAF1-202ENST00000540010 PDE1BQ01064 536 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 PRKCEQ02156 737 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 MKRN3Q13064 507 aaKnown RBP10.62□□□□□ -0.71
TRAF1-202ENST00000540010 GRM1Q13255 1194 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 RSRC2Q7L4I2 434 aaKnown RBP10.62□□□□□ -0.71
TRAF1-202ENST00000540010 DNAAF5Q86Y56 855 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 SLC17A8Q8NDX2 589 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 SLC10A4Q96EP9 437 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 INPP4AQ96PE3 977 aaPredicted RBP10.62□□□□□ -0.71
TRAF1-202ENST00000540010 KIFC3Q9BVG8 833 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 TIPINQ9BVW5 301 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 SPATC1LQ9H0A9 340 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 SPATS2LQ9NUQ6 558 aaKnown RBP10.62□□□□□ -0.71
TRAF1-202ENST00000540010 G3BP2Q9UN86 482 aaKnown RBP10.62□□□□□ -0.71
TRAF1-202ENST00000540010 PFASO15067 1338 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 MYPNQ86TC9 1320 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 KIF13BQ9NQT8 1826 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 MT-ND3P03897 115 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 PDHA1P08559 390 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 FOXR1Q6PIV2 292 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 RFX6Q8HWS3 928 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 XXYLT1Q8NBI6 393 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 CFAP57Q96MR6 1250 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 SYNGAP1Q96PV0 1343 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 A0A087X0T9 212 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 FAM228BP0C875 321 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 PON1P27169 355 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 SSTR3P32745 418 aaPredicted RBP10.62□□□□□ -0.71
TRAF1-202ENST00000540010 SOX10P56693 466 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 CORO7P57737 925 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 LMNB2Q03252 620 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 PPATQ06203 517 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 AP1ARQ63HQ0 302 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 TRAPPC11Q7Z392 1133 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 PARP9Q8IXQ6 854 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 MCPH1Q8NEM0 835 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 REPS2Q8NFH8 660 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 GSDMBQ8TAX9 411 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 MDM1Q8TC05 714 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 PPP4R1Q8TF05 950 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 PYROXD1Q8WU10 500 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 BAP1Q92560 729 aa10.62□□□□□ -0.71
TRAF1-202ENST00000540010 SLC35C1Q96A29 364 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms