RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 FZD8Q9H461 694 aa12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 BRD9Q9H8M2 597 aa12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 LMAN1LQ9HAT1 526 aa12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 ZFP14Q9HCL3 533 aa12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 TRPV5Q9NQA5 729 aa12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 SEMA4GQ9NTN9 838 aa12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 PRMT7Q9NVM4 692 aaPredicted RBP12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 SNTG2Q9NY99 539 aa12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 KCNJ14Q9UNX9 436 aa12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 CDY1Q9Y6F8 540 aa12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 USP24Q9UPU5 2620 aa12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 ARID2Q68CP9 1835 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 ARHGEF37A1IGU5 675 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 TMEM189-UBE2V1I3L0A0 370 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 MICAL2O94851 1124 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 FCARP24071 287 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 CXCL12P48061 93 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 CSRP2Q16527 193 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 FAM187BQ17R55 369 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 PRR23BQ6ZRT6 265 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 POTEDQ86YR6 584 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 ZNF461Q8TAF7 563 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 FAM3CQ92520 227 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 IRF7Q92985 503 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 ZNF274Q96GC6 653 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 TRMT61BQ9BVS5 477 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 POLR3FQ9H1D9 316 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 F5P12259 2224 aa12.85□□□□□ -0.35
CLSTN3-209ENST00000539982 CFAP47Q6ZTR5 3102 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 VWA8A3KMH1 1905 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 CACNA1GO43497 2377 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 LRRIQ4A6NIV6 560 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 ZNF197O14709 1029 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 N4BP3O15049 544 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 HRO43593 1189 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 TRAPPC3O43617 180 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 FOXD2O60548 495 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 RECQL4O94761 1208 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 B3GAT3O94766 335 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 LRG1P02750 347 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 XRCC6P12956 609 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 CEBPBP17676 345 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 CNR2P34972 360 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 RBM25P49756 843 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 RARRES1P49788 294 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 IRX6P78412 446 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 TOB2Q14106 344 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 SIM2Q14190 667 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 GRM2Q14416 872 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 FAM78AQ5JUQ0 283 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 PRSS36Q5K4E3 855 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 CPLX2Q6PUV4 134 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 PRR23CQ6ZRP0 262 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 PIK3AP1Q6ZUJ8 805 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 ANKS3Q6ZW76 656 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 MAP4K3Q8IVH8 894 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 DDX1Q92499 740 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 CCDC43Q96MW1 224 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 PDZD7Q9H5P4 517 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 ZNF334Q9HCZ1 680 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 PCDHA12Q9UN75 941 aa12.84□□□□□ -0.35
CLSTN3-209ENST00000539982 TTLL13PA6NNM8 815 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 ABLIM3O94929 683 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 CHRNB1P11230 501 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 PSMC3P17980 439 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 IGFBP6P24592 240 aaPredicted RBP12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 TKTP29401 623 aaKnown RBP12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 ELF1P32519 619 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 PRPF4BQ13523 1007 aaKnown RBP12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 CDCA2Q69YH5 1023 aaPredicted RBP12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 SLC8B1Q6J4K2 584 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 CD300LGQ6UXG3 332 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 RUFY3Q7L099 469 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 NOSTRINQ8IVI9 506 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 ZBTB8OSQ8IWT0 167 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 ASB16Q96NS5 453 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 CORO1BQ9BR76 489 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 ADPGKQ9BRR6 497 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 DAXXQ9UER7 740 aaPredicted RBP12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 PIAS3Q9Y6X2 628 aa12.83□□□□□ -0.36
CLSTN3-209ENST00000539982 A0A087WWV3 80 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 PRRG1O14668 218 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 GDF9O60383 454 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 ATF2P15336 505 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 XBP1P17861 261 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 GDI1P31150 447 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 CLCNKBP51801 687 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 MLLT6P55198 1093 aaPredicted RBP12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 SATB1Q01826 763 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 UPP1Q16831 310 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 TMEM132AQ24JP5 1023 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 MAEAQ7L5Y9 396 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 TCEAL8Q8IYN2 117 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 SPEM1Q8N4L4 309 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 OXER1Q8TDS5 423 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 PIGOQ8TEQ8 1089 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 SMARCD2Q92925 531 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 TCEAL4Q96EI5 215 aa12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 DDX27Q96GQ7 796 aaKnown RBP12.82□□□□□ -0.36
CLSTN3-209ENST00000539982 UROC1Q96N76 676 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms