RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 VITQ6UXI7 678 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.37□□□□□ -0.27
YBX3-207ENST00000539204 KBTBD6Q86V97 674 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 MFSD6LQ8IWD5 586 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 DEPDC1BQ8WUY9 529 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 GAB3Q8WWW8 586 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 TCEAL4Q96EI5 215 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 KIF12Q96FN5 646 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 MSANTD3Q96H12 275 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 TMEM121BQ9BXQ6 578 aaPredicted RBP13.37□□□□□ -0.27
YBX3-207ENST00000539204 SMOC1Q9H4F8 434 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 C8orf33Q9H7E9 229 aaPredicted RBP13.37□□□□□ -0.27
YBX3-207ENST00000539204 BMP2KQ9NSY1 1161 aaPredicted RBP13.37□□□□□ -0.27
YBX3-207ENST00000539204 WASF3Q9UPY6 502 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 CCDC196A0A1B0GTZ2 297 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 ARHGEF37A1IGU5 675 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 NRG2O14511 850 aaPredicted RBP13.36□□□□□ -0.27
YBX3-207ENST00000539204 NPTXRO95502 500 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 THP07101 528 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 CCDC192P0DO97 292 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 ADD1P35611 737 aaKnown RBP13.36□□□□□ -0.27
YBX3-207ENST00000539204 VIPR2P41587 438 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 POU5F1BQ06416 359 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 TFDP1Q14186 410 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 DAB2IPQ5VWQ8 1189 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 CREB3L3Q68CJ9 461 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 SLC27A1Q6PCB7 646 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 PDZD4Q76G19 769 aaPredicted RBP13.36□□□□□ -0.27
YBX3-207ENST00000539204 OTUD6AQ7L8S5 288 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 YAF2Q8IY57 180 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 ZNF461Q8TAF7 563 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 ZSWIM3Q96MP5 696 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 SCNM1Q9BWG6 230 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 SLKQ9H2G2 1235 aaPredicted RBP13.36□□□□□ -0.27
YBX3-207ENST00000539204 C2orf42Q9NWW7 574 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 MTRRQ9UBK8 725 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 BACE2Q9Y5Z0 518 aa13.36□□□□□ -0.27
YBX3-207ENST00000539204 SMG1Q96Q15 3661 aaKnown RBP13.36□□□□□ -0.27
YBX3-207ENST00000539204 GREB1Q4ZG55 1949 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 ZMYM2Q9UBW7 1377 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 A0A1B0GUA9 196 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 WDR27A2RRH5 827 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 C4orf47A7E2U8 309 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 TAF4O00268 1085 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 PRRG1O14668 218 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 TOP3BO95985 862 aaKnown RBP13.35□□□□□ -0.27
YBX3-207ENST00000539204 FGFR3P22607 806 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 MPLP40238 635 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 EMC2Q15006 297 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 AMHR2Q16671 573 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 SH3PXD2AQ5TCZ1 1133 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 Q6ZS52 159 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 CDR2LQ86X02 465 aaPredicted RBP13.35□□□□□ -0.27
YBX3-207ENST00000539204 SYNPOQ8N3V7 929 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 FAM200AQ8TCP9 573 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 TBCKQ8TEA7 893 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 ZCCHC14Q8WYQ9 949 aaKnown RBP13.35□□□□□ -0.27
YBX3-207ENST00000539204 GATA6Q92908 595 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 E2F7Q96AV8 911 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 TRPV4Q9HBA0 871 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 NAP1L2Q9ULW6 460 aaPredicted RBP13.35□□□□□ -0.27
YBX3-207ENST00000539204 NBEAQ8NFP9 2946 aa13.35□□□□□ -0.27
YBX3-207ENST00000539204 DMXL2Q8TDJ6 3036 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 LAMA1P25391 3075 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 CYP3A7-CYP3A51PA0A087WV96 503 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 CCDC163A0A0D9SF12 145 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 KLF18A0A0U1RQI7 1052 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 ARNTLO00327 626 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 PRPF3O43395 683 aaKnown RBP13.34□□□□□ -0.27
YBX3-207ENST00000539204 P4HBP07237 508 aaKnown RBP13.34□□□□□ -0.27
YBX3-207ENST00000539204 CEACAM1P13688 526 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 CYP3A7P24462 503 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 YWHABP31946 246 aaKnown RBP13.34□□□□□ -0.27
YBX3-207ENST00000539204 EXOSC10Q01780 885 aaKnown RBP13.34□□□□□ -0.27
YBX3-207ENST00000539204 AKAP17AQ02040 695 aaKnown RBP13.34□□□□□ -0.27
YBX3-207ENST00000539204 MBTD1Q05BQ5 628 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 NECTIN1Q15223 517 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 XKR9Q5GH70 373 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 IQCEQ6IPM2 695 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 ANKS3Q6ZW76 656 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 IFNLR1Q8IU57 520 aaPredicted RBP13.34□□□□□ -0.27
YBX3-207ENST00000539204 CCDC148Q8NFR7 591 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 ZC3H10Q96K80 434 aaKnown RBP13.34□□□□□ -0.27
YBX3-207ENST00000539204 ZNF512Q96ME7 567 aaPredicted RBP13.34□□□□□ -0.27
YBX3-207ENST00000539204 MTRQ99707 1265 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 C22orf23Q9BZE7 217 aa13.34□□□□□ -0.27
YBX3-207ENST00000539204 FLNBO75369 2602 aaKnown RBP13.34□□□□□ -0.27
YBX3-207ENST00000539204 GCN1Q92616 2671 aaKnown RBP13.34□□□□□ -0.27
YBX3-207ENST00000539204 MYBPHLA2RUH7 354 aa13.33□□□□□ -0.28
YBX3-207ENST00000539204 SLC38A8A6NNN8 435 aa13.33□□□□□ -0.28
YBX3-207ENST00000539204 HEPACAM2A8MVW5 462 aa13.33□□□□□ -0.28
YBX3-207ENST00000539204 EML1O00423 815 aa13.33□□□□□ -0.28
YBX3-207ENST00000539204 CHADO15335 359 aa13.33□□□□□ -0.28
YBX3-207ENST00000539204 B4GALT5O43286 388 aa13.33□□□□□ -0.28
YBX3-207ENST00000539204 TRAPPC3O43617 180 aa13.33□□□□□ -0.28
YBX3-207ENST00000539204 B3GAT3O94766 335 aa13.33□□□□□ -0.28
YBX3-207ENST00000539204 ABLIM3O94929 683 aa13.33□□□□□ -0.28
YBX3-207ENST00000539204 HOXC13P31276 330 aa13.33□□□□□ -0.28
YBX3-207ENST00000539204 CCR2P41597 374 aa13.33□□□□□ -0.28
YBX3-207ENST00000539204 SOX9P48436 509 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms