RNA–Protein interactions for RNA: ENST00000536145.3

CPSF7-215, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 4

Gene CPSF7, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-215	ENST00000536145	LRRC37B	Q96QE4	947 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	HAPLN3	Q96S86	360 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	P2RX7	Q99572	595 aa	Known RBP	7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	POLR3C	Q9BUI4	534 aa	Predicted RBP	7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	UBE2O	Q9C0C9	1292 aa	Known RBP	7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	TMX4	Q9H1E5	349 aa	Predicted RBP	7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	IKZF4	Q9H2S9	585 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	MMADHC	Q9H3L0	296 aa	Predicted RBP	7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	ZWILCH	Q9H900	591 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	ZNF287	Q9HBT7	754 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	SLCO1B3	Q9NPD5	702 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	ARHGEF4	Q9NR80	690 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	CHST7	Q9NS84	486 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	ARL8B	Q9NVJ2	186 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	LMCD1	Q9NZU5	365 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	STX18	Q9P2W9	335 aa	Known RBP	7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	SCOC	Q9UIL1	159 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	MTMR7	Q9Y216	660 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	PCDHB13	Q9Y5F0	798 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	STK24	Q9Y6E0	443 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	KAT6B	Q8WYB5	2073 aa		7.38	□□□□□ -1.23
CPSF7-215	ENST00000536145	MYH14	Q7Z406	1995 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	NFASC	O94856	1347 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	FOCAD	Q5VW36	1801 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	XIRP1	Q702N8	1843 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	TMEM110-MUSTN1	A8MSY1	372 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145		F5H6K3	240 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	P4HA2	O15460	535 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	EXOC3	O60645	756 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	TBX10	O75333	385 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	ZWINT	O95229	277 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	IL1B	P01584	269 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	KRT18	P05783	430 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	PYGL	P06737	847 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	LDHB	P07195	334 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	LDHC	P07864	332 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	SKI	P12755	728 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	KLRC2	P26717	231 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	TM4SF1	P30408	202 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	CIITA	P33076	1130 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	MAN1A1	P33908	653 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	RASSF2	P50749	326 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	RHBDL3	P58872	404 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	RPS8	P62241	208 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	MYL7	Q01449	175 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	CENPC	Q03188	943 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	DNAJC3	Q13217	504 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	PABPC4	Q13310	644 aa	Known RBP eCLIP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	HNRNPD	Q14103	355 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	RCN2	Q14257	317 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	KRT72	Q14CN4	511 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	PKN2	Q16513	984 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	CNPY1	Q3B7I2	92 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	TAF1B	Q53T94	588 aa	Predicted RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	PLEKHG4	Q58EX7	1191 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	DAB2IP	Q5VWQ8	1189 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	CLEC4G	Q6UXB4	293 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	C1orf186	Q6ZWK4	172 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	CLNK	Q7Z7G1	428 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	MAPKAPK5	Q8IW41	473 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	RBM12B	Q8IXT5	1001 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	DHX37	Q8IY37	1157 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	SRRM1	Q8IYB3	904 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	SLFN12	Q8IYM2	578 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	ADGRF4	Q8IZF3	695 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	BBOF1	Q8ND07	529 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	FAM81A	Q8TBF8	368 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	C1orf54	Q8WWF1	131 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	SCG3	Q8WXD2	468 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	SKA1	Q96BD8	255 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	FAM163A	Q96GL9	167 aa	Predicted RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	FGD4	Q96M96	766 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	PWWP2A	Q96N64	755 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	TUBB6	Q9BUF5	446 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	TRAIP	Q9BWF2	469 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	ANO3	Q9BYT9	981 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	KIAA1586	Q9HCI6	787 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	IRAK4	Q9NWZ3	460 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	MTMR4	Q9NYA4	1195 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	ZNF212	Q9UDV6	495 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	SAP30BP	Q9UHR5	308 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	ANAPC5	Q9UJX4	755 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	GTF3C4	Q9UKN8	822 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	VAV3	Q9UKW4	847 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	SMG5	Q9UPR3	1016 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	SH3BP1	Q9Y3L3	701 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	COL5A3	P25940	1745 aa	Predicted RBP	7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	ZNF831	Q5JPB2	1677 aa		7.37	□□□□□ -1.23
CPSF7-215	ENST00000536145	GAK	O14976	1311 aa		7.36	□□□□□ -1.23
CPSF7-215	ENST00000536145	UMODL1	Q5DID0	1318 aa		7.36	□□□□□ -1.23
CPSF7-215	ENST00000536145	FAM196B	A6NMK8	535 aa		7.36	□□□□□ -1.23
CPSF7-215	ENST00000536145		H0Y3Z8	333 aa		7.36	□□□□□ -1.23
CPSF7-215	ENST00000536145	EML1	O00423	815 aa		7.36	□□□□□ -1.23
CPSF7-215	ENST00000536145	CLDN3	O15551	220 aa		7.36	□□□□□ -1.23
CPSF7-215	ENST00000536145	THAP12	O43422	761 aa		7.36	□□□□□ -1.23
CPSF7-215	ENST00000536145	SGPL1	O95470	568 aa		7.36	□□□□□ -1.23
CPSF7-215	ENST00000536145	LYN	P07948	512 aa		7.36	□□□□□ -1.23
CPSF7-215	ENST00000536145	TRIM49	P0CI25	452 aa		7.36	□□□□□ -1.23

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms