RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 AMHP03971 560 aa4.93□□□□□ -1.62
CD44-233ENST00000531141 RAP2BP61225 183 aa4.93□□□□□ -1.62
CD44-233ENST00000531141 DSC2Q02487 901 aa4.93□□□□□ -1.62
CD44-233ENST00000531141 RRP1BQ14684 758 aaKnown RBP4.93□□□□□ -1.62
CD44-233ENST00000531141 SPDYAQ5MJ70 313 aa4.93□□□□□ -1.62
CD44-233ENST00000531141 ZNF529Q6P280 563 aa4.93□□□□□ -1.62
CD44-233ENST00000531141 EPM2AIP1Q7L775 607 aaPredicted RBP4.93□□□□□ -1.62
CD44-233ENST00000531141 RNF169Q8NCN4 708 aa4.93□□□□□ -1.62
CD44-233ENST00000531141 DIS3LQ8TF46 1054 aaKnown RBP4.93□□□□□ -1.62
CD44-233ENST00000531141 STON2Q8WXE9 905 aa4.93□□□□□ -1.62
CD44-233ENST00000531141 PGBD4Q96DM1 585 aa4.93□□□□□ -1.62
CD44-233ENST00000531141 CLIP3Q96DZ5 547 aa4.93□□□□□ -1.62
CD44-233ENST00000531141 H3BML4 177 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 ERC2O15083 957 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 HAUS5O94927 633 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 POMCP01189 267 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 CD1AP06126 327 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 FTH1P19P0C7X4 201 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 NOGQ13253 232 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 ZNF267Q14586 743 aaPredicted RBP4.92□□□□□ -1.62
CD44-233ENST00000531141 PABPC1LQ4VXU2 614 aaKnown RBP4.92□□□□□ -1.62
CD44-233ENST00000531141 SLC4A10Q6U841 1118 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 B3GNT9Q6UX72 402 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 RNF207Q6ZRF8 634 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 TMPRSS6Q8IU80 811 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 DENND1CQ8IV53 801 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 GRAMD1CQ8IYS0 662 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 MYO1HQ8N1T3 1032 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 DCBLD1Q8N8Z6 715 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 C3orf20Q8ND61 904 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 NLGN4YQ8NFZ3 816 aaPredicted RBP4.92□□□□□ -1.62
CD44-233ENST00000531141 C1GALT1C1Q96EU7 318 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 FAM167AQ96KS9 214 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 LRGUKQ96M69 825 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 TAAR9Q96RI9 348 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 NDC1Q9BTX1 674 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 SLC23A1Q9UHI7 598 aa4.92□□□□□ -1.62
CD44-233ENST00000531141 FEZ2Q9UHY8 353 aaPredicted RBP4.92□□□□□ -1.62
CD44-233ENST00000531141 NOB1Q9ULX3 412 aaKnown RBP4.92□□□□□ -1.62
CD44-233ENST00000531141 GOLGA6CA6NDK9 693 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 GOLGA6BA6NDN3 693 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 DIRC3C9JPN6 131 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 GRM6O15303 877 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 AP1G1O43747 822 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 GOLGA6DP0CG33 693 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 MTHFD1P11586 935 aaKnown RBP4.91□□□□□ -1.62
CD44-233ENST00000531141 MAP2K6P52564 334 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 HK3P52790 923 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 MLC1Q15049 377 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 CSRP2Q16527 193 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 MINDY4Q4G0A6 757 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 RUNDC1Q96C34 613 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 MTFMTQ96DP5 389 aaKnown RBP4.91□□□□□ -1.62
CD44-233ENST00000531141 FAM193BQ96PV7 902 aaPredicted RBP4.91□□□□□ -1.62
CD44-233ENST00000531141 DMRTA2Q96SC8 542 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 DCLRE1CQ96SD1 692 aaKnown RBP4.91□□□□□ -1.62
CD44-233ENST00000531141 PACSIN1Q9BY11 444 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 WDCPQ9H6R7 721 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 ZNF703Q9H7S9 590 aaPredicted RBP4.91□□□□□ -1.62
CD44-233ENST00000531141 ANLNQ9NQW6 1124 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 PARPBPQ9NWS1 579 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 GOLGA6AQ9NYA3 693 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 POGKQ9P215 609 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 EIF2B4Q9UI10 523 aaKnown RBP4.91□□□□□ -1.62
CD44-233ENST00000531141 STXBP5LQ9Y2K9 1186 aa4.91□□□□□ -1.62
CD44-233ENST00000531141 GRXCR1A8MXD5 290 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 KIAA0391O15091 583 aaKnown RBP4.9□□□□□ -1.63
CD44-233ENST00000531141 PRPF3O43395 683 aaKnown RBP4.9□□□□□ -1.63
CD44-233ENST00000531141 RECQL4O94761 1208 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 PARNO95453 639 aaKnown RBP4.9□□□□□ -1.63
CD44-233ENST00000531141 SPATA31D3P0C874 917 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 MALP21145 153 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 ZNF280AP59817 542 aaPredicted RBP4.9□□□□□ -1.63
CD44-233ENST00000531141 TOB2Q14106 344 aaPredicted RBP4.9□□□□□ -1.63
CD44-233ENST00000531141 USP39Q53GS9 565 aaKnown RBP4.9□□□□□ -1.63
CD44-233ENST00000531141 RABL3Q5HYI8 236 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 SPATA31D4Q6ZUB0 917 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 UBE3BQ7Z3V4 1068 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 SYT12Q8IV01 421 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 FMNL3Q8IVF7 1028 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 CAMKK1Q8N5S9 505 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 SLC35G2Q8TBE7 412 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 TSR2Q969E8 191 aaKnown RBP4.9□□□□□ -1.63
CD44-233ENST00000531141 CDK5RAP3Q96JB5 506 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 MYOCQ99972 504 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 REXO4Q9GZR2 422 aaKnown RBP4.9□□□□□ -1.63
CD44-233ENST00000531141 LMBRD1Q9NUN5 540 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 GNL3LQ9NVN8 582 aaKnown RBP4.9□□□□□ -1.63
CD44-233ENST00000531141 FBXO34Q9NWN3 711 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 SIDT1Q9NXL6 827 aaKnown RBP4.9□□□□□ -1.63
CD44-233ENST00000531141 CHPF2Q9P2E5 772 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 PNPLA7Q6ZV29 1317 aa4.9□□□□□ -1.63
CD44-233ENST00000531141 LRRC14BA6NHZ5 514 aa4.89□□□□□ -1.63
CD44-233ENST00000531141 NT5C1B-RDH14C9J2C7 533 aa4.89□□□□□ -1.63
CD44-233ENST00000531141 ITGB1P05556 798 aa4.89□□□□□ -1.63
CD44-233ENST00000531141 ATF3P18847 181 aa4.89□□□□□ -1.63
CD44-233ENST00000531141 SMARCA1P28370 1054 aa4.89□□□□□ -1.63
CD44-233ENST00000531141 APOBEC3AP31941 199 aaPredicted RBP4.89□□□□□ -1.63
CD44-233ENST00000531141 BUD31P41223 144 aaPredicted RBP4.89□□□□□ -1.63
CD44-233ENST00000531141 CHN2P52757 468 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms