RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 RBM19Q9Y4C8 960 aaKnown RBP14.25□□□□□ -0.13
CPSF1-204ENST00000529288 CDY1Q9Y6F8 540 aa14.25□□□□□ -0.13
CPSF1-204ENST00000529288 NUMBLQ9Y6R0 609 aa14.25□□□□□ -0.13
CPSF1-204ENST00000529288 ZNF318Q5VUA4 2279 aa14.25□□□□□ -0.13
CPSF1-204ENST00000529288 NPHP3-ACAD11A0A0J9YXS1 232 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 PODXLO00592 558 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 HNRNPA1P09651 372 aaKnown RBP eCLIP14.24□□□□□ -0.13
CPSF1-204ENST00000529288 AOC1P19801 751 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 FGFR3P22607 806 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 SOX4Q06945 474 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-204ENST00000529288 MAPK7Q13164 816 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 RAB33AQ14088 237 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 DHX8Q14562 1220 aaKnown RBP14.24□□□□□ -0.13
CPSF1-204ENST00000529288 UPP1Q16831 310 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 SPECC1Q5M775 1068 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 MPZL3Q6UWV2 235 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 RSPO2Q6UXX9 243 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-204ENST00000529288 TAS1R3Q7RTX0 852 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 C3orf58Q8NDZ4 430 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 GPR152Q8TDT2 470 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 NXPE3Q969Y0 559 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 PNMA5Q96PV4 448 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 RTP3Q9BQQ7 232 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 SLC38A7Q9NVC3 462 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 WNT16Q9UBV4 365 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 SMC3Q9UQE7 1217 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 NUB1Q9Y5A7 615 aa14.24□□□□□ -0.13
CPSF1-204ENST00000529288 TDRD15B5MCY1 1934 aaKnown RBP14.23□□□□□ -0.13
CPSF1-204ENST00000529288 PLXNA3P51805 1871 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 KRBA1A5PL33 1030 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 PLA2G4BP0C869 781 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 MCF2P10911 925 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 SRFP11831 508 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 ELF1P32519 619 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 SMTNP53814 917 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 ATP2C1P98194 919 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-204ENST00000529288 PARM1Q6UWI2 310 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 CD300LGQ6UXG3 332 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 ANKS3Q6ZW76 656 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 ITFG1Q8TB96 612 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 C18orf25Q96B23 403 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-204ENST00000529288 BICD1Q96G01 975 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 DDX27Q96GQ7 796 aaKnown RBP14.23□□□□□ -0.13
CPSF1-204ENST00000529288 SNX27Q96L92 541 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 ZMAT2Q96NC0 199 aaKnown RBP14.23□□□□□ -0.13
CPSF1-204ENST00000529288 RPP25Q9BUL9 199 aaKnown RBP14.23□□□□□ -0.13
CPSF1-204ENST00000529288 PTPRHQ9HD43 1115 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 HCFC1R1Q9NWW0 138 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 ARHGAP28Q9P2N2 729 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 MTRRQ9UBK8 725 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 CDH7Q9ULB5 785 aa14.23□□□□□ -0.13
CPSF1-204ENST00000529288 TMEM189-UBE2V1I3L0A0 370 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 CD2BP2O95400 341 aaKnown RBP14.22□□□□□ -0.13
CPSF1-204ENST00000529288 PLS3P13797 630 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 GUCY2CP25092 1073 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 SPAG1Q07617 926 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 HTR4Q13639 388 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 FRMD5Q7Z6J6 570 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 SYT2Q8N9I0 419 aaPredicted RBP14.22□□□□□ -0.13
CPSF1-204ENST00000529288 DTWD2Q8NBA8 298 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 RASSF8Q8NHQ8 419 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 ING5Q8WYH8 240 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 FGF13Q92913 245 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 TIPINQ9BVW5 301 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 TBC1D17Q9HA65 648 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 C17orf75Q9HAS0 396 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 BACE2Q9Y5Z0 518 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 KMT2EQ8IZD2 1858 aa14.22□□□□□ -0.13
CPSF1-204ENST00000529288 MYO10Q9HD67 2058 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 ANHXE9PGG2 379 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 PRRG1O14668 218 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 LRG1P02750 347 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 DCNP07585 359 aaKnown RBP14.21□□□□□ -0.13
CPSF1-204ENST00000529288 MCM4P33991 863 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 GPC5P78333 572 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 ANGPT1Q15389 498 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 UVSSAQ2YD98 709 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 PABPC1LQ4VXU2 614 aaKnown RBP14.21□□□□□ -0.13
CPSF1-204ENST00000529288 VARS2Q5ST30 1063 aaKnown RBP14.21□□□□□ -0.13
CPSF1-204ENST00000529288 LARP1BQ659C4 914 aaKnown RBP14.21□□□□□ -0.13
CPSF1-204ENST00000529288 ALKAL1Q6UXT8 129 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 CCDC105Q8IYK2 499 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 FGF14Q92915 247 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 MCRS1Q96EZ8 462 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 ZHX3Q9H4I2 956 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 ARHGEF3Q9NR81 526 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 DNMT3BQ9UBC3 853 aaKnown RBP14.21□□□□□ -0.13
CPSF1-204ENST00000529288 DAXXQ9UER7 740 aaPredicted RBP14.21□□□□□ -0.13
CPSF1-204ENST00000529288 KCNG1Q9UIX4 513 aa14.21□□□□□ -0.13
CPSF1-204ENST00000529288 MRPS23Q9Y3D9 190 aaKnown RBP14.21□□□□□ -0.13
CPSF1-204ENST00000529288 ZFP37Q9Y6Q3 630 aaPredicted RBP14.21□□□□□ -0.13
CPSF1-204ENST00000529288 ZDBF2Q9HCK1 2354 aa14.2□□□□□ -0.14
CPSF1-204ENST00000529288 H7C4K7 107 aa14.2□□□□□ -0.14
CPSF1-204ENST00000529288 TULP1O00294 542 aaPredicted RBP14.2□□□□□ -0.14
CPSF1-204ENST00000529288 CLDN3O15551 220 aa14.2□□□□□ -0.14
CPSF1-204ENST00000529288 TOM1L1O75674 476 aa14.2□□□□□ -0.14
CPSF1-204ENST00000529288 PAPLNO95428 1278 aa14.2□□□□□ -0.14
CPSF1-204ENST00000529288 KRT18P05783 430 aaKnown RBP14.2□□□□□ -0.14
CPSF1-204ENST00000529288 MAPTP10636 758 aaKnown RBP14.2□□□□□ -0.14
CPSF1-204ENST00000529288 KCNE1P15382 129 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms