RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 DDX1Q92499 740 aaKnown RBP22.28■■□□□ 1.16
VPS28-209ENST00000528142 RPGRIP1Q96KN7 1286 aa22.28■■□□□ 1.16
VPS28-209ENST00000528142 ARID3AQ99856 593 aa22.28■■□□□ 1.16
VPS28-209ENST00000528142 ANKZF1Q9H8Y5 726 aa22.28■■□□□ 1.16
VPS28-209ENST00000528142 AKT3Q9Y243 479 aa22.28■■□□□ 1.16
VPS28-209ENST00000528142 VTNP04004 478 aa22.27■■□□□ 1.16
VPS28-209ENST00000528142 CYP2C19P33261 490 aa22.27■■□□□ 1.16
VPS28-209ENST00000528142 FMO1Q01740 532 aa22.27■■□□□ 1.16
VPS28-209ENST00000528142 NOGQ13253 232 aa22.27■■□□□ 1.16
VPS28-209ENST00000528142 SURF1Q15526 300 aa22.27■■□□□ 1.16
VPS28-209ENST00000528142 ZNF568Q3ZCX4 644 aa22.27■■□□□ 1.16
VPS28-209ENST00000528142 SPOPLQ6IQ16 392 aa22.27■■□□□ 1.16
VPS28-209ENST00000528142 RFFLQ8WZ73 363 aa22.27■■□□□ 1.16
VPS28-209ENST00000528142 PARD6BQ9BYG5 372 aa22.27■■□□□ 1.16
VPS28-209ENST00000528142 CDT1Q9H211 546 aa22.27■■□□□ 1.16
VPS28-209ENST00000528142 CA12O43570 354 aa22.27■■□□□ 1.15
VPS28-209ENST00000528142 GZMAP12544 262 aa22.27■■□□□ 1.15
VPS28-209ENST00000528142 CYP2B6P20813 491 aa22.27■■□□□ 1.15
VPS28-209ENST00000528142 RGS2P41220 211 aa22.27■■□□□ 1.15
VPS28-209ENST00000528142 CDR2Q01850 454 aa22.27■■□□□ 1.15
VPS28-209ENST00000528142 SCARA3Q6AZY7 606 aa22.27■■□□□ 1.15
VPS28-209ENST00000528142 KIAA0319LQ8IZA0 1049 aa22.27■■□□□ 1.15
VPS28-209ENST00000528142 MSANTD4Q8NCY6 345 aa22.27■■□□□ 1.15
VPS28-209ENST00000528142 CTNNBL1Q8WYA6 563 aaPredicted RBP22.27■■□□□ 1.15
VPS28-209ENST00000528142 THAP2Q9H0W7 228 aa22.27■■□□□ 1.15
VPS28-209ENST00000528142 F2P00734 622 aa22.26■■□□□ 1.15
VPS28-209ENST00000528142 FTLP02792 175 aaPredicted RBP22.26■■□□□ 1.15
VPS28-209ENST00000528142 MMEP08473 750 aa22.26■■□□□ 1.15
VPS28-209ENST00000528142 ACO1P21399 889 aaKnown RBP22.26■■□□□ 1.15
VPS28-209ENST00000528142 CXCR5P32302 372 aa22.26■■□□□ 1.15
VPS28-209ENST00000528142 CAP1Q01518 475 aa22.26■■□□□ 1.15
VPS28-209ENST00000528142 NCOA4Q13772 614 aa22.26■■□□□ 1.15
VPS28-209ENST00000528142 TAF3Q5VWG9 929 aa22.26■■□□□ 1.15
VPS28-209ENST00000528142 CDR2LQ86X02 465 aaPredicted RBP22.26■■□□□ 1.15
VPS28-209ENST00000528142 THNSL1Q8IYQ7 743 aa22.26■■□□□ 1.15
VPS28-209ENST00000528142 SLC35G2Q8TBE7 412 aa22.26■■□□□ 1.15
VPS28-209ENST00000528142 KAT2BQ92831 832 aa22.26■■□□□ 1.15
VPS28-209ENST00000528142 ARHGEF26Q96DR7 871 aa22.26■■□□□ 1.15
VPS28-209ENST00000528142 PSMB7Q99436 277 aa22.26■■□□□ 1.15
VPS28-209ENST00000528142 RRN3P2A6NIE6 340 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 GPR25O00155 361 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 RTN2O75298 545 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 CSDE1O75534 798 aaKnown RBP22.25■■□□□ 1.15
VPS28-209ENST00000528142 ABCB4P21439 1286 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 PDE6CP51160 858 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 CLCN6P51797 869 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 CUL2Q13617 745 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 TCEAL1Q15170 157 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 TLK2Q86UE8 772 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 CEP120Q8N960 986 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 CAGE1Q8TC20 777 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 LMBR1Q8WVP7 490 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 SOCS4Q8WXH5 440 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 PPP1R16BQ96T49 567 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 APBA2Q99767 749 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 OSGEPQ9NPF4 335 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 SETD4Q9NVD3 440 aa22.25■■□□□ 1.15
VPS28-209ENST00000528142 ZEB2O60315 1214 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 B4GALT4O60513 344 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 PHACTR2O75167 634 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 CST3P01034 146 aaPredicted RBP22.24■■□□□ 1.15
VPS28-209ENST00000528142 CLTAP09496 248 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 ITIH3Q06033 890 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 LENG1Q96BZ8 264 aaPredicted RBP22.24■■□□□ 1.15
VPS28-209ENST00000528142 PACSIN2Q9UNF0 486 aaPredicted RBP22.24■■□□□ 1.15
VPS28-209ENST00000528142 STXBP5LQ9Y2K9 1186 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 NUB1Q9Y5A7 615 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 MYH10P35580 1976 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 PCNTO95613 3336 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 KRT5P13647 590 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 NOP14P78316 857 aaKnown RBP22.24■■□□□ 1.15
VPS28-209ENST00000528142 DUOXA2Q1HG44 320 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 TMEM132AQ24JP5 1023 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 MTMR12Q9C0I1 747 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 GOLPH3Q9H4A6 298 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 PDZD7Q9H5P4 517 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 CNTN6Q9UQ52 1028 aa22.24■■□□□ 1.15
VPS28-209ENST00000528142 TNPO2O14787 897 aaKnown RBP22.23■■□□□ 1.15
VPS28-209ENST00000528142 ASS1P00966 412 aaKnown RBP22.23■■□□□ 1.15
VPS28-209ENST00000528142 MCF2P10911 925 aa22.23■■□□□ 1.15
VPS28-209ENST00000528142 HADHBP55084 474 aaKnown RBP22.23■■□□□ 1.15
VPS28-209ENST00000528142 TMEM192Q8IY95 271 aa22.23■■□□□ 1.15
VPS28-209ENST00000528142 FAM212AQ96EL1 285 aa22.23■■□□□ 1.15
VPS28-209ENST00000528142 ARHGAP39Q9C0H5 1083 aa22.23■■□□□ 1.15
VPS28-209ENST00000528142 ABCB6Q9NP58 842 aa22.23■■□□□ 1.15
VPS28-209ENST00000528142 ARGLU1Q9NWB6 273 aaPredicted RBP22.23■■□□□ 1.15
VPS28-209ENST00000528142 RNF14Q9UBS8 474 aa22.23■■□□□ 1.15
VPS28-209ENST00000528142 RAB21Q9UL25 225 aa22.23■■□□□ 1.15
VPS28-209ENST00000528142 Q9Y3F1 56 aa22.23■■□□□ 1.15
VPS28-209ENST00000528142 UMODL1Q5DID0 1318 aa22.23■■□□□ 1.15
VPS28-209ENST00000528142 KIF4AO95239 1232 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 SMIM10L2AP0DMW4 78 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 SMIM10L2BP0DMW5 78 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 ARF4P18085 180 aaPredicted RBP22.22■■□□□ 1.15
VPS28-209ENST00000528142 TBXAS1P24557 533 aaPredicted RBP22.22■■□□□ 1.15
VPS28-209ENST00000528142 OSTNP61366 133 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 IRX5P78411 483 aaPredicted RBP22.22■■□□□ 1.15
VPS28-209ENST00000528142 RPS6KA1Q15418 735 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 ZNF410Q86VK4 478 aa22.22■■□□□ 1.15
VPS28-209ENST00000528142 EFCAB13Q8IY85 973 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms