RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 CYP24A1Q07973 514 aa16.63■□□□□ 0.25
LSM1-203ENST00000520755 KYAT1Q16773 422 aa16.63■□□□□ 0.25
LSM1-203ENST00000520755 TPD52L1Q16890 204 aaPredicted RBP16.63■□□□□ 0.25
LSM1-203ENST00000520755 GLRA4Q5JXX5 417 aa16.63■□□□□ 0.25
LSM1-203ENST00000520755 APTXQ7Z2E3 356 aaKnown RBP16.63■□□□□ 0.25
LSM1-203ENST00000520755 FAM186BQ8IYM0 893 aa16.63■□□□□ 0.25
LSM1-203ENST00000520755 RDH13Q8NBN7 331 aa16.63■□□□□ 0.25
LSM1-203ENST00000520755 FAM193BQ96PV7 902 aaPredicted RBP16.63■□□□□ 0.25
LSM1-203ENST00000520755 RPF1Q9H9Y2 349 aaKnown RBP16.63■□□□□ 0.25
LSM1-203ENST00000520755 CERS4Q9HA82 394 aa16.63■□□□□ 0.25
LSM1-203ENST00000520755 KANSL3Q9P2N6 904 aa16.63■□□□□ 0.25
LSM1-203ENST00000520755 COL4A4P53420 1690 aaPredicted RBP16.62■□□□□ 0.25
LSM1-203ENST00000520755 BECN2A8MW95 431 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 KCNJ18B7U540 433 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 LDHAP00338 332 aaKnown RBP16.62■□□□□ 0.25
LSM1-203ENST00000520755 PSMC2P35998 433 aaKnown RBP16.62■□□□□ 0.25
LSM1-203ENST00000520755 MCCD1P59942 119 aaPredicted RBP16.62■□□□□ 0.25
LSM1-203ENST00000520755 KCNJ12Q14500 433 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 SLC10A6Q3KNW5 377 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 C1orf220Q5T0J3 134 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 GSTCDQ8NEC7 633 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 RSPH1Q8WYR4 309 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 FAM212AQ96EL1 285 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 FAM84AQ96KN4 292 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 SNX27Q96L92 541 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 MFSD14AQ96MC6 490 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 TGS1Q96RS0 853 aaKnown RBP16.62■□□□□ 0.25
LSM1-203ENST00000520755 C17orf80Q9BSJ5 609 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 CWH43Q9H720 699 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 RBAKQ9NYW8 714 aaPredicted RBP16.62■□□□□ 0.25
LSM1-203ENST00000520755 PLAGL2Q9UPG8 496 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 FRMD4BQ9Y2L6 1034 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 PTPRJQ12913 1337 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 SCN1AP35498 2009 aa16.62■□□□□ 0.25
LSM1-203ENST00000520755 PLXNA4Q9HCM2 1894 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 PTGESO14684 152 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 INPPL1O15357 1258 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 ZC3H11AO75152 810 aaKnown RBP eCLIP16.61■□□□□ 0.25
LSM1-203ENST00000520755 EPB41P11171 864 aaKnown RBP16.61■□□□□ 0.25
LSM1-203ENST00000520755 CTNNB1P35222 781 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 DLG4P78352 724 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 PPP2R3AQ06190 1150 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 SPAG1Q07617 926 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 GRIK3Q13003 919 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 TCP11X2Q5H9J9 407 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 ZNF697Q5TEC3 545 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 FRMD5Q7Z6J6 570 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 ZNF280BQ86YH2 543 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 TRIM59Q8IWR1 403 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 ARNTL2Q8WYA1 636 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 ZNF576Q9H609 170 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 NRDE2Q9H7Z3 1164 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 KIAA1586Q9HCI6 787 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 TSC2P49815 1807 aa16.61■□□□□ 0.25
LSM1-203ENST00000520755 SMIM28A0A1B0GU29 152 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 TTC26A0AVF1 554 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 FSD2A1L4K1 749 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 ZNF233A6NK53 670 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 LACTBL1A8MY62 500 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 B4GALT3O60512 393 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 DDHD2O94830 711 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 FGFR1OPO95684 399 aaKnown RBP16.6■□□□□ 0.25
LSM1-203ENST00000520755 THP07101 528 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 LINC00271P0C7V0 271 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 TRIM49P0CI25 452 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 TRIM49CP0CI26 452 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 LAG3P18627 525 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 PBX3P40426 434 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 FXR1P51114 621 aaKnown RBP eCLIP16.6■□□□□ 0.25
LSM1-203ENST00000520755 ERVK-21P61565 698 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 BFSP1Q12934 665 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 PSMD6Q15008 389 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 KRT31Q15323 416 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 CCDC40Q4G0X9 1142 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 ALKAL1Q6UXT8 129 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 EFCAB13Q8IY85 973 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 CLP1Q92989 425 aaKnown RBP16.6■□□□□ 0.25
LSM1-203ENST00000520755 SLC35C1Q96A29 364 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 FAM161BQ96MY7 647 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 TTYH1Q9H313 450 aaPredicted RBP16.6■□□□□ 0.25
LSM1-203ENST00000520755 PLEKHA5Q9HAU0 1116 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 PDE11AQ9HCR9 933 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 AAASQ9NRG9 546 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 CNTN3Q9P232 1028 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 DNAJB4Q9UDY4 337 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 RWDD3Q9Y3V2 267 aa16.6■□□□□ 0.25
LSM1-203ENST00000520755 TMEM265A0A087WTH1 108 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 LRRIQ3A6PVS8 624 aaPredicted RBP16.59■□□□□ 0.25
LSM1-203ENST00000520755 GOLGA6L19H0YKK7 550 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 AP5Z1O43299 807 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 GNA14O95837 355 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 EEF1GP26641 437 aaKnown RBP16.59■□□□□ 0.25
LSM1-203ENST00000520755 BCAR1P56945 870 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 POU5F1Q01860 360 aaKnown RBP16.59■□□□□ 0.25
LSM1-203ENST00000520755 EPC2Q52LR7 807 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 XKR4Q5GH76 650 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 MIIPQ5JXC2 388 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 KCNT2Q6UVM3 1135 aa16.59■□□□□ 0.25
LSM1-203ENST00000520755 INTS8Q75QN2 995 aaKnown RBP16.59■□□□□ 0.25
LSM1-203ENST00000520755 FAM114A1Q8IWE2 563 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms