RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 PASKQ96RG2 1323 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 A0A0B4J269 797 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 LRRIQ4A6NIV6 560 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 EBAG9O00559 213 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 USP2O75604 605 aaPredicted RBP15.89■□□□□ 0.13
NUP54-217ENST00000514987 EDNRBP24530 442 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 COPB2P35606 906 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 PTP4A2Q12974 167 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 TARBP2Q15633 366 aaKnown RBP15.89■□□□□ 0.13
NUP54-217ENST00000514987 KCNV1Q6PIU1 500 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 CCDC137Q6PK04 289 aaKnown RBP15.89■□□□□ 0.13
NUP54-217ENST00000514987 SYDE1Q6ZW31 735 aaPredicted RBP15.89■□□□□ 0.13
NUP54-217ENST00000514987 HOOK3Q86VS8 718 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 MCOLN2Q8IZK6 566 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 SH2D3CQ8N5H7 860 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 BCAS4Q8TDM0 211 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 ASAP3Q8TDY4 903 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 SLCO2A1Q92959 643 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 TMEM143Q96AN5 459 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 CEP89Q96ST8 783 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 CGRRF1Q99675 332 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 MSTO1Q9BUK6 570 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.89■□□□□ 0.13
NUP54-217ENST00000514987 LCMT1Q9UIC8 334 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 CSADQ9Y600 493 aa15.89■□□□□ 0.13
NUP54-217ENST00000514987 FSCN2O14926 492 aa15.88■□□□□ 0.13
NUP54-217ENST00000514987 ATMINO43313 823 aaPredicted RBP15.88■□□□□ 0.13
NUP54-217ENST00000514987 CYP1A1P04798 512 aaPredicted RBP15.88■□□□□ 0.13
NUP54-217ENST00000514987 PYGMP11217 842 aa15.88■□□□□ 0.13
NUP54-217ENST00000514987 COILP38432 576 aaPredicted RBP15.88■□□□□ 0.13
NUP54-217ENST00000514987 MDH1P40925 334 aaKnown RBP15.88■□□□□ 0.13
NUP54-217ENST00000514987 NSFP46459 744 aaKnown RBP15.88■□□□□ 0.13
NUP54-217ENST00000514987 CENPCQ03188 943 aa15.88■□□□□ 0.13
NUP54-217ENST00000514987 SEPT14Q6ZU15 432 aa15.88■□□□□ 0.13
NUP54-217ENST00000514987 B4GALNT4Q76KP1 1039 aa15.88■□□□□ 0.13
NUP54-217ENST00000514987 ADAT2Q7Z6V5 191 aaKnown RBP15.88■□□□□ 0.13
NUP54-217ENST00000514987 LRRC19Q9H756 370 aa15.88■□□□□ 0.13
NUP54-217ENST00000514987 MRPL47Q9HD33 250 aaKnown RBP15.88■□□□□ 0.13
NUP54-217ENST00000514987 ACP6Q9NPH0 428 aa15.88■□□□□ 0.13
NUP54-217ENST00000514987 HOMER3Q9NSC5 361 aa15.88■□□□□ 0.13
NUP54-217ENST00000514987 FEZ2Q9UHY8 353 aaPredicted RBP15.88■□□□□ 0.13
NUP54-217ENST00000514987 CNTN6Q9UQ52 1028 aa15.88■□□□□ 0.13
NUP54-217ENST00000514987 ZNFX1Q9P2E3 1918 aaKnown RBP15.88■□□□□ 0.13
NUP54-217ENST00000514987 GSTTP1A0A1W2PQM5 241 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 ADCY3O60266 1144 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 NUDT17P0C025 328 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 UBA1P22314 1058 aaKnown RBP15.87■□□□□ 0.13
NUP54-217ENST00000514987 MARCKSL1P49006 195 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 STAT5BP51692 787 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 PMS2P54278 862 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 NLRP11P59045 1033 aaKnown RBP15.87■□□□□ 0.13
NUP54-217ENST00000514987 IFFO1Q0D2I5 559 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 CUL2Q13617 745 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 SLMAPQ14BN4 828 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 SURF1Q15526 300 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 TDRD10Q5VZ19 366 aaKnown RBP15.87■□□□□ 0.13
NUP54-217ENST00000514987 CRELD2Q6UXH1 353 aaPredicted RBP15.87■□□□□ 0.13
NUP54-217ENST00000514987 PROCA1Q8NCQ7 364 aaPredicted RBP15.87■□□□□ 0.13
NUP54-217ENST00000514987 TCP11Q8WWU5 503 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 SEPT1Q8WYJ6 367 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 GLG1Q92896 1179 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 C18orf8Q96DM3 657 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 PI4K2AQ9BTU6 479 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 TRIM31Q9BZY9 425 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 EPN3Q9H201 632 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 PABPC3Q9H361 631 aaKnown RBP15.87■□□□□ 0.13
NUP54-217ENST00000514987 ANAPC7Q9UJX3 599 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 SNCAIPQ9Y6H5 919 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 ADGRA2Q96PE1 1338 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 MYO1FO00160 1098 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 MAFO75444 373 aaPredicted RBP15.87■□□□□ 0.13
NUP54-217ENST00000514987 FARP2O94887 1054 aaPredicted RBP15.87■□□□□ 0.13
NUP54-217ENST00000514987 ACO1P21399 889 aaKnown RBP15.87■□□□□ 0.13
NUP54-217ENST00000514987 LSP1P33241 339 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 FLT3P36888 993 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 ACOT2P49753 483 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 CNTN2Q02246 1040 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 IER5Q5VY09 327 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.87■□□□□ 0.13
NUP54-217ENST00000514987 CCDC105Q8IYK2 499 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 C3orf20Q8ND61 904 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 JPH2Q9BR39 696 aaPredicted RBP15.87■□□□□ 0.13
NUP54-217ENST00000514987 IMPG2Q9BZV3 1241 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 ATP8A1Q9Y2Q0 1164 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 TELO2Q9Y4R8 837 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 SCINQ9Y6U3 715 aa15.87■□□□□ 0.13
NUP54-217ENST00000514987 DICER1Q9UPY3 1922 aaKnown RBP15.87■□□□□ 0.13
NUP54-217ENST00000514987 VNN1O95497 513 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 ECEL1O95672 775 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 SLC25A27O95847 323 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 CLTAP09496 248 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 RARAP10276 462 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 ATP1A2P50993 1020 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 PLTPP55058 493 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 PDCLQ13371 301 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 VGLL4Q14135 290 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 KRT71Q3SY84 523 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 DENND2CQ68D51 928 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 FOXR1Q6PIV2 292 aa15.86■□□□□ 0.13
NUP54-217ENST00000514987 METTL7BQ6UX53 244 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms