RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 THP07101 528 aa12.12□□□□□ -0.47
DDX41-216ENST00000513562 FNTBP49356 437 aa12.12□□□□□ -0.47
DDX41-216ENST00000513562 SPIRE1Q08AE8 756 aa12.12□□□□□ -0.47
DDX41-216ENST00000513562 SRSF5Q13243 272 aaKnown RBP12.12□□□□□ -0.47
DDX41-216ENST00000513562 CTTNQ14247 550 aaKnown RBP12.12□□□□□ -0.47
DDX41-216ENST00000513562 INF2Q27J81 1249 aa12.12□□□□□ -0.47
DDX41-216ENST00000513562 PPP4R3AQ6IN85 833 aa12.12□□□□□ -0.47
DDX41-216ENST00000513562 KRT25Q7Z3Z0 450 aa12.12□□□□□ -0.47
DDX41-216ENST00000513562 LONP2Q86WA8 852 aa12.12□□□□□ -0.47
DDX41-216ENST00000513562 FAM177A1Q8N128 213 aaPredicted RBP12.12□□□□□ -0.47
DDX41-216ENST00000513562 SPEM1Q8N4L4 309 aa12.12□□□□□ -0.47
DDX41-216ENST00000513562 HAS1Q92839 578 aa12.12□□□□□ -0.47
DDX41-216ENST00000513562 DYDC2Q96IM9 177 aa12.12□□□□□ -0.47
DDX41-216ENST00000513562 ASB16Q96NS5 453 aa12.12□□□□□ -0.47
DDX41-216ENST00000513562 NCOA5Q9HCD5 579 aaKnown RBP12.12□□□□□ -0.47
DDX41-216ENST00000513562 ZZEF1O43149 2961 aa12.12□□□□□ -0.47
DDX41-216ENST00000513562 MTCL1Q9Y4B5 1905 aaKnown RBP12.11□□□□□ -0.47
DDX41-216ENST00000513562 ARNTLO00327 626 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 TBX3O15119 743 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 DGAT1O75907 488 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 RECQL4O94761 1208 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 PROS1P07225 676 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 GCFC2P16383 781 aaKnown RBP12.11□□□□□ -0.47
DDX41-216ENST00000513562 PTPN2P17706 415 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 PSMC3P17980 439 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 GDI1P31150 447 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 MLLT6P55198 1093 aaPredicted RBP12.11□□□□□ -0.47
DDX41-216ENST00000513562 CYP4A11Q02928 519 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 PTGDRQ13258 359 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 NCAPH2Q6IBW4 605 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 GALNT17Q6IS24 598 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 VITQ6UXI7 678 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 PPP4R3CPQ6ZMV5 832 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 FAM160A2Q8N612 972 aaPredicted RBP12.11□□□□□ -0.47
DDX41-216ENST00000513562 DEPDC1BQ8WUY9 529 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 TCEAL4Q96EI5 215 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 DDX27Q96GQ7 796 aaKnown RBP12.11□□□□□ -0.47
DDX41-216ENST00000513562 MSANTD3Q96H12 275 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 PRIMPOLQ96LW4 560 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 CXCL16Q9H2A7 254 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 SNTG2Q9NY99 539 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 COL4A2P08572 1712 aa12.11□□□□□ -0.47
DDX41-216ENST00000513562 WDR27A2RRH5 827 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 ZNF197O14709 1029 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 SLITRK3O94933 977 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 LYPLA2O95372 231 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 LRG1P02750 347 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 IGFBP6P24592 240 aaPredicted RBP12.1□□□□□ -0.47
DDX41-216ENST00000513562 TKTP29401 623 aaKnown RBP12.1□□□□□ -0.47
DDX41-216ENST00000513562 PDIA3P30101 505 aaKnown RBP12.1□□□□□ -0.47
DDX41-216ENST00000513562 CCR2P41597 374 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 RBM25P49756 843 aaKnown RBP12.1□□□□□ -0.47
DDX41-216ENST00000513562 EVCP57679 992 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 ROR1Q01973 937 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 LRRC32Q14392 662 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 AASDHQ4L235 1098 aaPredicted RBP12.1□□□□□ -0.47
DDX41-216ENST00000513562 CDCA2Q69YH5 1023 aaPredicted RBP12.1□□□□□ -0.47
DDX41-216ENST00000513562 SLC8B1Q6J4K2 584 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 CD300LGQ6UXG3 332 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 ANKS3Q6ZW76 656 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 TRIM22Q8IYM9 498 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 ZNF461Q8TAF7 563 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 SMARCD2Q92925 531 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 KCNB2Q92953 911 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 JAKMIP1Q96N16 626 aaKnown RBP12.1□□□□□ -0.47
DDX41-216ENST00000513562 CORO1BQ9BR76 489 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 POLR3FQ9H1D9 316 aaPredicted RBP12.1□□□□□ -0.47
DDX41-216ENST00000513562 FZD8Q9H461 694 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 PDZD7Q9H5P4 517 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 SH2B1Q9NRF2 756 aaPredicted RBP12.1□□□□□ -0.47
DDX41-216ENST00000513562 ANKEF1Q9NU02 776 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 PRMT7Q9NVM4 692 aaPredicted RBP12.1□□□□□ -0.47
DDX41-216ENST00000513562 CEP295Q9C0D2 2601 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 ATRXP46100 2492 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 NCANO14594 1321 aa12.1□□□□□ -0.47
DDX41-216ENST00000513562 TTLL13PA6NNM8 815 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 N4BP3O15049 544 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 B3GAT3O94766 335 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 ABLIM3O94929 683 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 DEXIO95424 95 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 CCNE1P24864 410 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 HOXA6P31267 233 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 RARRES1P49788 294 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 CCT2P78371 535 aaKnown RBP12.09□□□□□ -0.47
DDX41-216ENST00000513562 SSRP1Q08945 709 aaKnown RBP12.09□□□□□ -0.47
DDX41-216ENST00000513562 SF3A2Q15428 464 aaKnown RBP12.09□□□□□ -0.47
DDX41-216ENST00000513562 FAM187BQ17R55 369 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 C1orf228Q6PIY5 440 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 BLOC1S2Q6QNY1 142 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 PDZD4Q76G19 769 aaPredicted RBP12.09□□□□□ -0.47
DDX41-216ENST00000513562 NEK8Q86SG6 692 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 TPH2Q8IWU9 490 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 ZSWIM3Q96MP5 696 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 TRPV4Q9HBA0 871 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 RXFP3Q9NSD7 469 aa12.09□□□□□ -0.47
DDX41-216ENST00000513562 NOTCH4Q99466 2003 aa12.08□□□□□ -0.48
DDX41-216ENST00000513562 TDRD15B5MCY1 1934 aaKnown RBP12.08□□□□□ -0.48
DDX41-216ENST00000513562 CCDC194A0A1B0GVG4 234 aa12.08□□□□□ -0.48
DDX41-216ENST00000513562 LRRIQ4A6NIV6 560 aa12.08□□□□□ -0.48
DDX41-216ENST00000513562 PRRG1O14668 218 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms