RNA–Protein interactions for RNA: ENST00000512431.5

DDX41-215, Transcript of DEAD-box helicase 41, human

TSL 5

Gene DDX41, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-215	ENST00000512431	PDZD4	Q76G19	769 aa	Predicted RBP	13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	ZNF687	Q8N1G0	1237 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	SPEM1	Q8N4L4	309 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	DEPDC1B	Q8WUY9	529 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	NAP1L4	Q99733	375 aa	Known RBP	13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	CORO1B	Q9BR76	489 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	XPNPEP1	Q9NQW7	623 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	PRMT7	Q9NVM4	692 aa	Predicted RBP	13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	BACE2	Q9Y5Z0	518 aa		13.9	□□□□□ -0.18
DDX41-215	ENST00000512431	SPTBN2	O15020	2390 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	CCDC194	A0A1B0GVG4	234 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	ZBTB39	O15060	712 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	B3GAT3	O94766	335 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	MICAL2	O94851	1124 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	CHRNB1	P11230	501 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	FGFR3	P22607	806 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	CCNE1	P24864	410 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	ARL2	P36404	184 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	LIMK1	P53667	647 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	CCT2	P78371	535 aa	Known RBP	13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	FAM78A	Q5JUQ0	283 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	CYP4A22	Q5TCH4	519 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	MAP4K3	Q8IVH8	894 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	FAM177A1	Q8N128	213 aa	Predicted RBP	13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	ELMOD1	Q8N336	334 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	DAGLB	Q8NCG7	672 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	ZNF461	Q8TAF7	563 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	CSGALNACT1	Q8TDX6	532 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	ASAP3	Q8TDY4	903 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	MSANTD3	Q96H12	275 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	PRIMPOL	Q96LW4	560 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	JAKMIP1	Q96N16	626 aa	Known RBP	13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	ADPGK	Q9BRR6	497 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	KCNMB3	Q9NPA1	279 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	SNTG2	Q9NY99	539 aa		13.89	□□□□□ -0.19
DDX41-215	ENST00000512431	ARHGEF37	A1IGU5	675 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	LRRIQ4	A6NIV6	560 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431		M0R2N6	131 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	PTGES	O14684	152 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	CPLX1	O14810	134 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	N4BP3	O15049	544 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	CCNT1	O60563	726 aa	Known RBP	13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	DEXI	O95424	95 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	PROS1	P07225	676 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	GLRA2	P23416	452 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	FCAR	P24071	287 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	SRSF5	Q13243	272 aa	Known RBP	13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	HEATR6	Q6AI08	1181 aa	Known RBP	13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	IQCE	Q6IPM2	695 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	NEK8	Q86SG6	692 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	ZBTB8OS	Q8IWT0	167 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	YAF2	Q8IY57	180 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	SLFN12	Q8IYM2	578 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	FBXL16	Q8N461	479 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	FAM160A2	Q8N612	972 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	SMARCD2	Q92925	531 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	ASB16	Q96NS5	453 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	NCOA5	Q9HCD5	579 aa	Known RBP	13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	ANKEF1	Q9NU02	776 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	DOCK6	Q96HP0	2047 aa		13.88	□□□□□ -0.19
DDX41-215	ENST00000512431	MAP1B	P46821	2468 aa	Known RBP	13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	TMEM189-UBE2V1	I3L0A0	370 aa		13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	AXIN1	O15169	862 aa		13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	RECQL4	O94761	1208 aa		13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	SLITRK3	O94933	977 aa		13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	PDIA3	P30101	505 aa	Known RBP	13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	KPNA1	P52294	538 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	MLLT6	P55198	1093 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	PTGDR	Q13258	359 aa		13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	PRSS36	Q5K4E3	855 aa		13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	CPLX2	Q6PUV4	134 aa	Known RBP	13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	VIT	Q6UXI7	678 aa		13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	PPP4R3CP	Q6ZMV5	832 aa		13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	E2F7	Q96AV8	911 aa		13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	ZNF512	Q96ME7	567 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	UROC1	Q96N76	676 aa		13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	POLR3F	Q9H1D9	316 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	CYP4F11	Q9HBI6	524 aa		13.87	□□□□□ -0.19
DDX41-215	ENST00000512431	WDR27	A2RRH5	827 aa		13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	PAPSS2	O95340	614 aa	Predicted RBP	13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	ATF2	P15336	505 aa		13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	TKT	P29401	623 aa	Known RBP	13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	RBM25	P49756	843 aa	Known RBP	13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	ARPP19	P56211	112 aa		13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	PRPF4B	Q13523	1007 aa	Known RBP	13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	DGKK	Q5KSL6	1271 aa		13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	MFSD6L	Q8IWD5	586 aa		13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	FAM200A	Q8TCP9	573 aa		13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	HAS1	Q92839	578 aa		13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	TCEAL4	Q96EI5	215 aa		13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	DDX27	Q96GQ7	796 aa	Known RBP	13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	LOXL4	Q96JB6	756 aa		13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	EIF2AK1	Q9BQI3	630 aa	Known RBP	13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	ARRDC1-AS1	Q9H2J1	176 aa		13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	C8orf33	Q9H7E9	229 aa	Predicted RBP	13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	DAXX	Q9UER7	740 aa	Predicted RBP	13.86	□□□□□ -0.19
DDX41-215	ENST00000512431	CACNA1G	O43497	2377 aa		13.85	□□□□□ -0.19
DDX41-215	ENST00000512431	LYPLA2	O95372	231 aa		13.85	□□□□□ -0.19
DDX41-215	ENST00000512431	ZNF806	P0C7X5	589 aa		13.85	□□□□□ -0.19
DDX41-215	ENST00000512431	RPS6KB1	P23443	525 aa		13.85	□□□□□ -0.19

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